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[186017_at]

Description Y68A4A.10 /REP_DB=WormBase Gene ID /WP=CE19260 /TR=Q9XXP6 /GB=CAA16424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 60      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 3.8
(-3)
A 		37.7
(3)
A 		18
(-0.5)
A 		10.8
(-1.8)
A 		34
B 31.1
(3)
A 		2.9
(-3)
A 		16.1
(-0.2)
A 		9.8
(-1.5)
A 		28
C 22.2
(2.9)
A 		17.8
(1.3)
A 		22.6
(3)
A 		6
(-3)
A 		17
avr 19
(2.7) 		19.5
(3) 		18.9
(2.7) 		8.9
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 8.4
(-2.3)
A 		2
(-3)
A 		28.4
(-0.1)
A 		55.9
(3)
A 		15.1
(-1.5)
A 		2
(-3)
A 		54
B 5.7
(-1.7)
A 		0.7
(-3)
A 		23.3
(3)
A 		19
(1.9)
A 		3.6
(-2.2)
A 		1.8
(-2.7)
A 		23
C 1.3
(-3)
A 		18.1
(3)
A 		13.1
(1.2)
A 		17.8
(2.9)
A 		2
(-2.8)
A 		4.4
(-1.9)
A 		17
avr 5.1
(-2.5) 		6.9
(-2.1) 		21.6
(1) 		30.9
(3) 		6.9
(-2.1) 		2.7
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-3)
A 		8.2
(3)
A 		4.7
(-0.1)
A 		1.6
(-2.8)
A 		7
B 9.9
(3)
A 		0.7
(-3)
A 		3.7
(-1)
A 		2.1
(-2.1)
A 		9
C 7.4
(2.6)
A 		5.1
(0.6)
A 		7.9
(3)
A 		1
(-3)
A 		7
avr 6.2
(3) 		4.7
(1) 		5.4
(2) 		1.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-2.6)
A 		0.7
(-2.9)
A 		6.2
(-0.5)
A 		14.2
(3)
A 		4.5
(-1.2)
A 		0.5
(-3)
A 		14
B 2
(-1)
A 		0.2
(-3)
A 		5.7
(3)
A 		5
(2.2)
A 		1.5
(-1.6)
A 		0.7
(-2.5)
A 		6
C 0.5
(-3)
A 		5.5
(3)
A 		3.3
(0.4)
A 		3.6
(0.7)
A 		0.7
(-2.8)
A 		1.5
(-1.8)
A 		5
avr 1.3
(-2.6) 		2.1
(-1.9) 		5.1
(0.8) 		7.6
(3) 		2.2
(-1.8) 		0.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12564
Sequence Type Exemplar sequence
Representative Public ID Y68A4A.10 NCBI
Target Description Y68A4A.10 /REP_DB=WormBase Gene ID /WP=CE19260 /TR=Q9XXP6 /GB=CAA16424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029105 NCBI Caenorhabditis elegans Y68A4A.10a (Y68A4A.10) mRNA, complete cds. 11/11 None
SNAP00000011463 ENSEMBL cdna:SNAP chromosome:CEL140:V:17204781:17207917:1 11/11 None
GENEFINDER00000011469 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17204781:17209737:1 11/11 None
Y68A4A.10 ENSEMBL cdna:known chromosome:CEL140:V:17204781:17207822:1 gene:Y68A4A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
190529 2 1 NM_001029105 186017_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17204780-17207822(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y68A4A.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16424 Hypothetical protein Y68A4A.10a [Caenorhabditis elegans] ref|NP_001024276.1| Y68A4A.10a [Caenorhabditis elegans] 0.0
blast CAB04138 Hypothetical protein F20E11.7 [Caenorhabditis elegans] ref|NP_507421.1| F20E11.7 [Caenorhabditis elegans] 1.0E-142
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 1.0E-118
blast CAA16417 Hypothetical protein Y68A4A.5 [Caenorhabditis elegans] ref|NP_507355.1| Y68A4A.5 [Caenorhabditis elegans] 1.0E-115
blast CAI79271 Hypothetical protein Y68A4A.10b [Caenorhabditis elegans] ref|NP_001024277.1| Y68A4A.10b [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.1E-52
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 5.1E-12
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.6E-23
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 2.2E-40
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 1.7E-48
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 2.2E-40
Pfam IPR005098 EMBL-EBI Protein of unknown function DUF281 2.2E-40
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011469 3 488-510,612-634,649-671
Sequence
Target Sequence 
>C. ELEGANS:186017_AT
gtgaaaaagcaacttgcaccgccacccctggtatgactcccggcgattgtgccacacttg
cagtcaaatgtatgataaacgctggattcgaatgtaatgacgtggcacttatccctccct
gccagacctgcactccattcacggatcctatgagtgataaaggcacatgcaccgccacca
ctggtatgactagcaccggttgctccacacttgcagtcaaatgtacgataaacgctggat
tcgaatgtgatgtagctaaatgcatgacagatcctggattcgaatgttatgacgctctac
ttatcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAAAAGCAACTTGCACCGCCAC 166 481 623 Antisense
GGATCCTATGAGTGATAAAGGCACA 443 509 765 Antisense
GTGATAAAGGCACATGCACCGCCAC 252 485 776 Antisense
CGCCACCACTGGTATGACTAGCACC 419 257 795 Antisense
CCACTGGTATGACTAGCACCGGTTG 574 273 800 Antisense
GTAGCTAAATGCATGACAGATCCTG 486 457 874 Antisense
GCTAAATGCATGACAGATCCTGGAT 638 301 877 Antisense
CAGATCCTGGATTCGAATGTTATGA 365 205 890 Antisense
GGATTCGAATGTTATGACGCTCTAC 380 509 898 Antisense
GAATGTTATGACGCTCTACTTATCC 340 331 904 Antisense
ATGTTATGACGCTCTACTTATCCTT 60 47 906 Antisense
Sequence Source Affymetrix Proprietary Database