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[186016_s_at]

Description C43E11.3 /REP_DB=WormBase Gene ID /WP=CE08681 /TR=P91152 /GB=AAB37626.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 37      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 378.8
(3)
P 		188.9
(-3)
P 		206
(-2.5)
P 		283.8
(-0)
P 		190
B 426.8
(3)
P 		199.4
(-2.7)
P 		187.4
(-3)
P 		323.2
(0.4)
P 		239
C 372
(3)
P 		210.5
(-3)
P 		213.3
(-2.9)
P 		345.2
(2)
P 		162
avr 392.5
(3) 		199.6
(-3) 		202.2
(-2.9) 		317.4
(0.7) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 254.5
(2.9)
P 		256.6
(3)
P 		165.8
(-3)
P 		176.9
(-2.3)
P 		167.5
(-2.9)
P 		207.5
(-0.2)
P 		91
B 306
(3)
P 		266.5
(0.9)
P 		192.3
(-3)
P 		251.8
(0.1)
P 		203.8
(-2.4)
P 		261.4
(0.6)
P 		114
C 265.1
(3)
P 		250.1
(1.7)
P 		216.4
(-1.1)
P 		209
(-1.7)
P 		193.4
(-3)
P 		250.4
(1.8)
P 		72
avr 275.2
(3) 		257.7
(1.8) 		191.5
(-2.8) 		212.6
(-1.3) 		188.2
(-3) 		239.8
(0.6) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 137.9
(3)
P 		41
(-3)
P 		53.9
(-2.2)
P 		41.5
(-3)
P 		97
B 136.1
(3)
P 		49.2
(-2.6)
P 		43.4
(-3)
P 		68.9
(-1.3)
P 		93
C 123.1
(3)
P 		60.5
(-2.8)
P 		74.3
(-1.5)
P 		58.2
(-3)
P 		65
avr 132.4
(3) 		50.2
(-3) 		57.2
(-2.5) 		56.2
(-2.6) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 46.9
(-1.8)
P 		91.3
(3)
P 		36.1
(-3)
P 		44.9
(-2)
P 		50.6
(-1.4)
P 		50.5
(-1.4)
P 		55
B 106.5
(3)
P 		88.7
(1.2)
P 		46.7
(-3)
P 		66.7
(-1)
P 		82.8
(0.6)
P 		97.5
(2.1)
P 		60
C 98.3
(3)
P 		76.3
(0.7)
P 		55.1
(-1.6)
P 		42
(-3)
P 		62.6
(-0.8)
P 		83.8
(1.5)
P 		56
avr 83.9
(2.8) 		85.4
(3) 		46
(-3) 		51.2
(-2.2) 		65.3
(-0.1) 		77.3
(1.8) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186016_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.340
Sequence Type Exemplar sequence
Representative Public ID C43E11.3 NCBI
Target Description C43E11.3 /REP_DB=WormBase Gene ID /WP=CE08681 /TR=P91152 /GB=AAB37626.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025867(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025867 NCBI Caenorhabditis elegans C43E11.13 (C43E11.13) mRNA, complete cds. 11/11 None
SNAP00000031017 ENSEMBL cdna:SNAP chromosome:CEL140:I:4255403:4264327:1 11/11 None
GENEFINDER00000031027 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4255403:4264880:1 11/11 None
C43E11.13 ENSEMBL cdna:known chromosome:CEL140:I:4257701:4264690:1 gene:C43E11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4255402-4264327(+) 95.35 100.0
Public Domain and Genome References
Gene Title
Ensembl C43E11.13
Entrez Gene 3564986 Entrez gene
SwissProt Q5LK40 EMBL-EBI
WormBase CE37884 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW30671 Hypothetical protein C43E11.13 [Caenorhabditis elegans] ref|NP_001021038.1| C43E11.13 [Caenorhabditis elegans] 0.0
blast B87754 protein C43E11.3 [imported] - Caenorhabditis elegans 0.0
blast CAE66816 Hypothetical protein CBG12181 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 3.4E-10
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.0E-49
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 3.4E-10
Pfam IPR001214 EMBL-EBI Nuclear protein SET 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:186016_S_AT
ttgtggtgcatctcctgatactacagttgtcattgctgacgagattactgaagaagagca
acaagctgaagttctggagaagccgcgtgttgttaaggaagaagttatcgagccaggttc
acaatctgaaactcaaaaagaatctccggagaaagttcgagttgttgtaccgaaagttga
agttgaaagatcaccgtcgccaaaatcttctcgtgatcgtgagaaggatcgagagaaatc
tcgtgagaaagatcgtgaaagagatcgtgacagaagagaaggttcaaaacatcgtgatag
ttatcatggacatcgaaacggcagcagttctgtcagtgaacgacgtatgcgagagttcaa
acatgagctggaacgatccactcgatctgccgttcgttctcgtctacaacatcaacgtga
cgcttctagtgataagactacttggcttattaagttaatatatcgagagattttcaaacg
agaaagtgcgcagagtggatttgattatcgattcagtgagaatactgataagaaggtgaa
aaactacgtcaagtcatatatcgaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTGGTGCATCTCCTGATACTACA 487 707 4173 Antisense
GATACTACAGTTGTCATTGCTGACG 590 423 4189 Antisense
TTCTGGAGAAGCCGCGTGTTGTTAA 541 689 4244 Antisense
AGTTATCGAGCCAGGTTCACAATCT 510 63 4275 Antisense
GAAGTTGAAAGATCACCGTCGCCAA 531 335 4351 Antisense
CGTCGCCAAAATCTTCTCGTGATCG 249 245 4367 Antisense
GAAACGGCAGCAGTTCTGTCAGTGA 661 357 4487 Antisense
TGAGCTGGAACGATCCACTCGATCT 109 569 4536 Antisense
TCGTTCTCGTCTACAACATCAACGT 474 603 4566 Antisense
ACATCAACGTGACGCTTCTAGTGAT 175 105 4581 Antisense
ACTACGTCAAGTCATATATCGACCG 295 101 4715 Antisense
Sequence Source Affymetrix Proprietary Database