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[186015_at]

Description ZK1240.2 /REP_DB=WormBase Gene ID /WP=CE15531 /TR=O16682 /GB=AAB66145.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 72.3
(-2.1)
P 		112.8
(1.4)
A 		61.5
(-3)
A 		132
(3)
P 		71
B 100
(3)
P 		86.3
(0.4)
A 		68.5
(-3)
M 		77
(-1.4)
P 		32
C 90.5
(3)
A 		75.7
(0.7)
A 		52.6
(-3)
A 		88.8
(2.7)
A 		38
avr 87.6
(1.2) 		91.6
(1.8) 		60.9
(-3) 		99.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 117.8
(3)
A 		86.5
(-0.3)
A 		74.5
(-1.5)
A 		85.9
(-0.3)
A 		60.3
(-3)
A 		84.5
(-0.5)
A 		58
B 93.3
(2)
P 		91.7
(1.8)
P 		53.3
(-3)
P 		101.4
(3)
A 		71
(-0.8)
A 		54.1
(-2.9)
P 		48
C 47
(-3)
P 		107.3
(1.6)
P 		126.5
(3)
P 		75
(-0.9)
A 		66.6
(-1.5)
A 		61.1
(-1.9)
A 		80
avr 86
(1.1) 		95.2
(3) 		84.8
(0.9) 		87.4
(1.4) 		66
(-3) 		66.6
(-2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 26.3
(3)
P 		24.5
(1.9)
A 		16.1
(-3)
A 		19.3
(-1.1)
P 		10
B 31.9
(3)
P 		21.3
(-1)
A 		15.9
(-3)
M 		16.4
(-2.8)
P 		16
C 30
(3)
A 		21.8
(-0.3)
A 		18.3
(-1.7)
A 		15
(-3)
A 		15
avr 29.4
(3) 		22.5
(-0.3) 		16.8
(-3) 		16.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 21.7
(-0.7)
A 		30.8
(3)
A 		16.2
(-3)
A 		21.8
(-0.7)
A 		18.2
(-2.2)
A 		20.6
(-1.2)
A 		15
B 32.5
(3)
P 		30.5
(2.4)
P 		12.9
(-3)
P 		26.9
(1.3)
A 		28.9
(1.9)
A 		20.2
(-0.8)
P 		20
C 17.4
(-2.2)
P 		32.7
(3)
P 		32.2
(2.8)
P 		15.1
(-3)
A 		21.6
(-0.8)
A 		20.5
(-1.2)
A 		18
avr 23.9
(-1.1) 		31.3
(3) 		20.4
(-3) 		21.3
(-2.5) 		22.9
(-1.6) 		20.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5599
Sequence Type Exemplar sequence
Representative Public ID ZK1240.2 NCBI
Target Description ZK1240.2 /REP_DB=WormBase Gene ID /WP=CE15531 /TR=O16682 /GB=AAB66145.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061840
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000039231 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2323413:2326584:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039228 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2323411-2326227(+) 97.53 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast B88072 protein ZK1240.2 [imported] - Caenorhabditis elegans 0.0
blast AAB66145 Hypothetical protein ZK1240.2 [Caenorhabditis elegans] ref|NP_494241.2| ZK1240.2 [Caenorhabditis elegans] 1.0E-168
blast AAF16618 Hypothetical protein F43C11.8 [Caenorhabditis elegans] ref|NP_494244.1| F43C11.8 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.8E-7
Sequence
Target Sequence 
>C. ELEGANS:186015_AT
gctaatttccggccactgtggaataataatcactagctataaaagcgctagagcatatca
cagaggagcaataatttcggattccgaaatgtatcgaatctttttgattttttcctgttt
ggttggccacctggaagccaactgtatcgccaaggcaccaatgaaggagacaataatttc
tgagagatcaatgcctctagctgtcaagtgttccaaagaatgtttgaacccgcctgtcga
aaaaccggaagactccagagtaacgggctacattcagaaaaattttatctatactgaagg
ttgctcgattggatgtaagcgaggtccaggatgcggagcgcttacgttccaggtgagctt
ttgcctagttttaggaacaatttggtgtcaaagggtcctatttcggcttgatctacgaaa
aaaactcgcctctggtgaaactgtaccaataggcccaccacaacttcccgtaccattgtt
cactcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAATTTCCGGCCACTGTGGAATA 71 301 1089 Antisense
TTCCTGTTTGGTTGGCCACCTGGAA 89 687 1200 Antisense
AAGCCAACTGTATCGCCAAGGCACC 116 147 1223 Antisense
AATGCCTCTAGCTGTCAAGTGTTCC 287 167 1278 Antisense
CAAAGAATGTTTGAACCCGCCTGTC 214 191 1302 Antisense
GAGGTCCAGGATGCGGAGCGCTTAC 521 401 1409 Antisense
CTTACGTTCCAGGTGAGCTTTTGCC 669 221 1429 Antisense
CAAAGGGTCCTATTTCGGCTTGATC 327 193 1477 Antisense
AAAACTCGCCTCTGGTGAAACTGTA 144 131 1509 Antisense
TGAAACTGTACCAATAGGCCCACCA 604 531 1524 Antisense
TTCCCGTACCATTGTTCACTCAAAA 286 697 1553 Antisense
Sequence Source Affymetrix Proprietary Database