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[186014_at]

Description M04F3.2_rc /REP_DB=WormBase Gene ID /WP=CE23875 /GB=AAK71381.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 43      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 9.5
(-3)
A 		51.6
(3)
A 		10.3
(-2.9)
A 		29.2
(-0.2)
A 		42
B 16.5
(3)
A 		15
(2.1)
A 		6.8
(-3)
A 		11
(-0.4)
A 		10
C 44.9
(-3)
A 		73.9
(3)
A 		52.8
(-1.4)
A 		56
(-0.7)
A 		29
avr 23.6
(-2.9) 		46.8
(3) 		23.3
(-3) 		32.1
(-0.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 7.9
(-2.5)
A 		8.3
(-2.4)
A 		26.6
(3)
A 		6.3
(-3)
A 		13.1
(-1)
A 		10.6
(-1.7)
A 		20
B 41.1
(3)
A 		16.1
(-1.6)
A 		8.4
(-3)
A 		10.8
(-2.6)
A 		39.9
(2.8)
A 		24.5
(-0)
A 		33
C 10.1
(-1.8)
A 		11.6
(-1.3)
A 		26.6
(3)
A 		14.8
(-0.4)
A 		7
(-2.7)
A 		5.9
(-3)
A 		21
avr 19.7
(2.5) 		12
(-2.2) 		20.5
(3) 		10.6
(-3) 		20
(2.7) 		13.7
(-1.1) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.4
(-2.5)
A 		11.2
(3)
A 		2.7
(-3)
A 		4.3
(-1.9)
A 		9
B 5.3
(3)
A 		3.7
(0.4)
A 		1.6
(-3)
A 		2.3
(-1.9)
A 		4
C 14.9
(-0.2)
A 		21.3
(3)
A 		18.4
(1.5)
A 		9.4
(-3)
A 		12
avr 7.9
(-0.7) 		12.1
(3) 		7.6
(-1) 		5.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.5
(-3)
A 		2.9
(-1)
A 		5.8
(3)
A 		1.6
(-2.9)
A 		4
(0.5)
A 		2.6
(-1.5)
A 		4
B 14.3
(2.2)
A 		5.4
(-1.6)
A 		2
(-3)
A 		2.9
(-2.6)
A 		16.2
(3)
A 		9.1
(0)
A 		14
C 3.8
(-0.8)
A 		3.5
(-1.1)
A 		6.8
(3)
A 		3
(-1.8)
A 		2.3
(-2.6)
A 		2
(-3)
A 		5
avr 6.5
(1.8) 		3.9
(-1.3) 		4.9
(-0.1) 		2.5
(-3) 		7.5
(3) 		4.6
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28106
Sequence Type Exemplar sequence
Representative Public ID M04F3.2 NCBI
Target Description M04F3.2_rc /REP_DB=WormBase Gene ID /WP=CE23875 /GB=AAK71381.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) M04F3.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
M04F3.2 M04F3.2_rc /REP_DB=WormBase Gene ID /WP=CE23875 /GB=AAK71381.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059044 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4765754-4769402(-) 100.0 100.0
Public Domain and Genome References
Ensembl M04F3.2
Sequence
Target Sequence 
>C. ELEGANS:186014_AT
attatccttatcgtgcggaggttgcagaaatgggcgtattgtaaggcacggttctgtggg
cgtggccaatcccccgagttgggaatcccccagttggacatcccccgagttcttcgggtc
ttgcccaccacggaagccaccacctccgtcacgtcctctgaatcctcctcggtcgtcact
tctacggaagccaccacgagcttctcttcttcctctgaatccacctcggaaaacaccacg
actatcctcatatcttggacgcttcgaggcttcagttgttccccattcctcgttggcacg
cttcagatttctctcccgattcatcacaatctctctatccttctccgtctgattttcaac
ttcttcaacttgtccagtagtagcaccttgcttacgagtagcattctctcgaatttcctt
cacctctgtctcctcagcatcctgttgccccgaatgcagacatgcattcgctacgacggc
acttgctggaccgtgcggaggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATCCTTATCGTGCGGAGGTTGC 393 13 199 Antisense
TCTACGGAAGCCACCACGAGCTTCT 519 613 379 Antisense
TGAATCCACCTCGGAAAACACCACG 674 573 414 Antisense
CACCACGACTATCCTCATATCTTGG 34 203 432 Antisense
TCATATCTTGGACGCTTCGAGGCTT 541 619 446 Antisense
TTCTCCGTCTGATTTTCAACTTCTT 640 693 539 Antisense
TCAACTTCTTCAACTTGTCCAGTAG 111 631 554 Antisense
GTCCAGTAGTAGCACCTTGCTTACG 540 475 570 Antisense
TAGCATTCTCTCGAATTTCCTTCAC 62 653 597 Antisense
CTGTTGCCCCGAATGCAGACATGCA 47 239 640 Antisense
CACTTGCTGGACCGTGCGGAGGTTG 192 195 678 Antisense
Sequence Source Affymetrix Proprietary Database