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[186013_at]

Description Y87G2A.11 /REP_DB=WormBase Gene ID /WP=CE24682 /TR=Q9U1Q0 /GB=CAB60432.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 336.9
(3)
P 		305.8
(2.1)
P 		297.2
(1.9)
P 		129.4
(-3)
A 		208
B 373.3
(3)
P 		263.9
(0.4)
P 		252.9
(0.1)
P 		123.9
(-3)
A 		249
C 368.6
(3)
P 		303.3
(1.2)
P 		255.9
(-0.2)
P 		154.5
(-3)
M 		214
avr 359.6
(3) 		291
(1.2) 		268.7
(0.6) 		135.9
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 321
(-0.1)
P 		360.4
(3)
P 		293.6
(-2.3)
P 		342.5
(1.6)
P 		342.6
(1.6)
P 		284.4
(-3)
P 		76
B 332.9
(0.8)
P 		293.3
(-1.5)
P 		328.6
(0.6)
P 		266.5
(-3)
P 		361.9
(2.5)
P 		371.1
(3)
P 		105
C 358.9
(3)
P 		283.9
(-2.3)
P 		300.7
(-1.1)
P 		343.4
(1.9)
P 		287.5
(-2)
P 		273.2
(-3)
P 		86
avr 337.6
(3) 		312.5
(-2) 		307.6
(-3) 		317.5
(-1) 		330.7
(1.6) 		309.6
(-2.6) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 122.7
(3)
P 		66.4
(-0.3)
P 		77.7
(0.4)
P 		18.9
(-3)
A 		104
B 119.1
(3)
P 		65.2
(-0.5)
P 		58.6
(-0.9)
P 		26.4
(-3)
A 		93
C 122
(3)
P 		87.2
(0.8)
P 		89.2
(1)
P 		26
(-3)
M 		96
avr 121.3
(3) 		72.9
(0) 		75.2
(0.2) 		23.8
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 59.2
(-3)
P 		128.2
(3)
P 		63.9
(-2.6)
P 		86.9
(-0.6)
P 		103.4
(0.8)
P 		69.2
(-2.1)
P 		69
B 115.8
(0.5)
P 		97.6
(-0.9)
P 		79.8
(-2.3)
P 		70.6
(-3)
P 		147
(3)
P 		138.4
(2.3)
P 		76
C 133
(3)
P 		86.6
(-1.4)
P 		76.5
(-2.3)
P 		69
(-3)
P 		93
(-0.8)
P 		91.5
(-0.9)
P 		64
avr 102.7
(1.3) 		104.1
(1.5) 		73.4
(-3) 		75.5
(-2.7) 		114.5
(3) 		99.7
(0.8) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.840
Sequence Type Exemplar sequence
Representative Public ID Y87G2A.11 NCBI
Target Description Y87G2A.11 /REP_DB=WormBase Gene ID /WP=CE24682 /TR=Q9U1Q0 /GB=CAB60432.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060982 NCBI Caenorhabditis elegans Y87G2A.11 (Y87G2A.11) mRNA, complete cds. 11/11 None
SNAP00000019594 ENSEMBL cdna:SNAP chromosome:CEL140:I:13597540:13612092:-1 11/11 None
Y87G2A.11 ENSEMBL cdna:known chromosome:CEL140:I:13597540:13606623:-1 gene:Y87G2A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019603 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13597470-13606554(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y87G2A.11
Entrez Gene 190778 Entrez gene
SwissProt Q9U1Q0 EMBL-EBI
WormBase CE24682 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259564_AT transducin family protein / WD-40 repeat family protein at
CANINE:1586547_AT similar to tumor suppressing subtransferable candidate 1 cfa
CANINE_2:CFA.5873.1.A1_AT similar to tumor suppressing subtransferable candidate 1 cfa
CANINE_2:CFAAFFX.5809.1.S1_AT similar to tumor suppressing subtransferable candidate 1 cfa
DROSOPHILA_2:1624427_AT dm
DROSGENOME1:148663_AT dm
CHICKEN:GGAAFFX.10492.1.S1_S_AT tumor suppressing subtransferable candidate 1 gga
CHICKEN:GGAAFFX.12974.1.S1_S_AT tumor suppressing subtransferable candidate 1 gga
HG-U133_PLUS_2:217968_AT tumor suppressing subtransferable candidate 1 hs
HG-U133A:217968_AT tumor suppressing subtransferable candidate 1 hs
HG-FOCUS:217968_AT tumor suppressing subtransferable candidate 1 hs
HG-U133A_2:217968_AT tumor suppressing subtransferable candidate 1 hs
HU35KSUBA:RC_AA443941_AT tumor suppressing subtransferable candidate 1 hs
U133_X3P:G4507702_3P_AT tumor suppressing subtransferable candidate 1 hs
HG-U95B:57192_AT tumor suppressing subtransferable candidate 1 hs
HG-U95C:55427_R_AT Tumor suppressing subtransferable candidate 1 hs
HG-U95D:73007_AT Tumor suppressing subtransferable candidate 1 hs
HG-U95D:89726_R_AT Tumor suppressing subtransferable candidate 1 hs
HU35KSUBB:RC_R42333_AT Tumor suppressing subtransferable candidate 1 hs
MOUSE430_2:1445308_AT tumor suppressing subtransferable candidate 1 mm
MOE430B:1445308_AT tumor suppressing subtransferable candidate 1 mm
MG-U74CV2:135255_AT tumor suppressing subtransferable candidate 1 mm
MG-U74AV2:160587_AT tumor suppressing subtransferable candidate 1 mm
MOE430A:1436955_AT tumor suppressing subtransferable candidate 1 mm
MOUSE430A_2:1436955_AT tumor suppressing subtransferable candidate 1 mm
MOUSE430_2:1436955_AT tumor suppressing subtransferable candidate 1 mm
MOE430B:1441877_X_AT tumor suppressing subtransferable candidate 1 mm
MOUSE430_2:1441877_X_AT tumor suppressing subtransferable candidate 1 mm
MU19KSUBA:TC21940_AT Tumor suppressing subtransferable candidate 1, mRNA (cDNA clone MGC:25444 IMAGE:4191954) mm
MU19KSUBB:TC34506_AT Tumor suppressing subtransferable candidate 1, mRNA (cDNA clone MGC:25444 IMAGE:4191954) mm
Protein Similarities
Method ID Description E-Value
blast CAB60432 Hypothetical protein Y87G2A.11 [Caenorhabditis elegans] ref|NP_493383.1| Y87G2A.11 [Caenorhabditis elegans] 0.0
blast CAE72592 Hypothetical protein CBG19781 [Caenorhabditis briggsae] 0.0
blast CAB60433 Hypothetical protein Y87G2A.13 [Caenorhabditis elegans] ref|NP_493385.2| Y87G2A.13 [Caenorhabditis elegans] 0.0
blast CAE72592 Hypothetical protein CBG19781 [Caenorhabditis briggsae] 1.0E-155
blast T27472 hypothetical protein Y87G2A.t - Caenorhabditis elegans 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.88
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0032
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.88
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.3E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0032
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019594 6 75-97,107-129,136-154,201-223,338-360,401-423
Sequence
Target Sequence 
>C. ELEGANS:186013_AT
gatgagatgttcagtgccacgtggagcccgcatcatgatggaaatatgttgggagtaact
ggtggaagaacagcatggtgcattgattgtcggactgataatgaatatttaaaaattcga
gatgcacatattcatcgcacgatttctatggattttaatccgaatttacagcatgtaatc
gcaacatgcggggacgatggttacgtcagaatttgggatacacgttccacgtcatcagct
ctgacgtcactacatccccatgctcactgggtttggagtgtacgatttcatccggtacac
gatcaattattgctgacgggcggttcagacgcttctgtagtactttcatgtgctcaaagt
gttagtagtgaacagcagattgaatttcgagatgatgaggaagaggaagaagatgatgat
ttagtggaaaaactacaagatggacaattggaacgaattgatgagcatgaggatagtgta
tacgcctgcgcttggtcttcagccgatccgtggacatttgcctcattatcgtacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGATGTTCAGTGCCACGTGGA 339 411 505 Antisense
ATGCACATATTCATCGCACGATTTC 443 43 626 Antisense
TTGGGATACACGTTCCACGTCATCA 629 705 717 Antisense
GTCATCAGCTCTGACGTCACTACAT 622 467 735 Antisense
CATCCCCATGCTCACTGGGTTTGGA 416 209 757 Antisense
TACGATTTCATCCGGTACACGATCA 156 647 785 Antisense
ATTGCTGACGGGCGGTTCAGACGCT 570 5 813 Antisense
CAGACGCTTCTGTAGTACTTTCATG 343 205 830 Antisense
GAGGATAGTGTATACGCCTGCGCTT 672 401 973 Antisense
TTCAGCCGATCCGTGGACATTTGCC 198 685 1002 Antisense
GACATTTGCCTCATTATCGTACGAT 239 371 1017 Antisense
Sequence Source Affymetrix Proprietary Database