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[186011_at]

Description H09G03.1 /REP_DB=WormBase Gene ID /WP=CE19484 /TR=Q9TZ60 /GB=AAC68808.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 51.5
(-2.7)
P 		39.6
(-3)
A 		44.5
(-2.9)
A 		317
(3)
P 		277
B 58.6
(-1.5)
A 		37.4
(-2.2)
A 		16.2
(-3)
A 		183.1
(3)
P 		167
C 94.9
(-1)
P 		30.6
(-2.5)
A 		7
(-3)
A 		270.5
(3)
P 		264
avr 68.3
(-1.8) 		35.9
(-2.7) 		22.6
(-3) 		256.9
(3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 45.7
(-2)
A 		34
(-3)
A 		102.7
(3)
P 		46.7
(-1.9)
P 		70
(0.1)
P 		48.2
(-1.8)
A 		69
B 43.5
(-2)
A 		59.7
(1.4)
P 		46.8
(-1.3)
A 		38.9
(-3)
A 		67.2
(3)
P 		54.6
(0.3)
P 		28
C 63.4
(1.1)
M 		82.3
(2.4)
P 		2
(-3)
A 		57.4
(0.7)
P 		91.3
(3)
P 		75.9
(2)
P 		89
avr 50.9
(-2.3) 		58.7
(-0.7) 		50.5
(-2.4) 		47.7
(-3) 		76.2
(3) 		59.6
(-0.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 18.8
(-1.4)
P 		8.6
(-3)
A 		11.6
(-2.5)
A 		46.4
(3)
P 		38
B 18.7
(-0.5)
A 		9.2
(-2.1)
A 		3.7
(-3)
A 		39
(3)
P 		35
C 31.4
(1)
P 		8.8
(-2.1)
A 		2.5
(-3)
A 		45.6
(3)
P 		43
avr 23
(-0.3) 		8.9
(-2.5) 		5.9
(-3) 		43.7
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 8.4
(-3)
A 		12.1
(-1.4)
A 		22.4
(3)
P 		11.8
(-1.5)
P 		21.1
(2.4)
P 		11.7
(-1.6)
A 		14
B 15.1
(-1.3)
A 		19.9
(0.4)
P 		11.4
(-2.6)
A 		10.3
(-3)
A 		27.3
(3)
P 		20.4
(0.6)
P 		17
C 23.5
(1.8)
M 		25.1
(2.1)
P 		0.5
(-3)
A 		11.6
(-0.7)
P 		29.5
(3)
P 		25.4
(2.2)
P 		29
avr 15.7
(-1.2) 		19
(0.2) 		11.4
(-2.9) 		11.2
(-3) 		26
(3) 		19.2
(0.2) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6691
Sequence Type Exemplar sequence
Representative Public ID H09G03.1 NCBI
Target Description H09G03.1 /REP_DB=WormBase Gene ID /WP=CE19484 /TR=Q9TZ60 /GB=AAC68808.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065272
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H09G03.1 ENSEMBL cdna:known chromosome:CEL140:III:3226341:3230641:1 gene:H09G03.1 None
GENEFINDER00000003926 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3226341:3232913:1 None
NM_065272 NCBI Caenorhabditis elegans H09G03.1 (H09G03.1) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3226340-3231595(+) 81.28 100.0
Public Domain and Genome References
Gene Title
Ensembl H09G03.1
Entrez Gene 186710 Entrez gene
SwissProt Q9TZ60 EMBL-EBI
WormBase CE34570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68808 Hypothetical protein H09G03.1 [Caenorhabditis elegans] ref|NP_497673.2| H09G03.1 [Caenorhabditis elegans] 1.0E-154
blast AAC68808 Hypothetical protein H09G03.1 [Caenorhabditis elegans] ref|NP_497673.2| H09G03.1 [Caenorhabditis elegans] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:186011_AT
tttatttcagtattcactcccacacgtctcatatcaaacaatattgatattgcctttgtc
acacgtttttttgggtaaaataacaaaacagaaaacattgggaagaacaagatccggggt
agttatggaaaagcaacgtcggagcattgccatttatcacaaatcgagtagacagaaaat
tctagagcattttttttgtctccaatctccattatttatagaagccattcaccatgctca
acacttggtgaagcagatctcgaaatacttggatcttaggaaaactttgaaaattaaaga
gcaggtaagaaaaattaacttgttctgtaacattctagaatattcaagaaatttctggat
ttcaaaaattttcgaaatttgctgtacaaattatgatgctccaaaaattcctagaattat
ttatttgaaatttcataaacagttaaaattgtctgcaaacttgaaaagttatctgaagtt
ttttttcagaacaatgcgatcaattttcttcaaagccaagacaatcccagtcatcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATTTCAGTATTCACTCCCACAC 193 675 681 Antisense
TCCCACACGTCTCATATCAAACAAT 700 597 698 Antisense
GATATTGCCTTTGTCACACGTTTTT 520 427 726 Antisense
GGAAAAGCAACGTCGGAGCATTGCC 588 527 807 Antisense
GGAGCATTGCCATTTATCACAAATC 437 521 821 Antisense
GAGCATTTTTTTTGTCTCCAATCTC 490 389 865 Antisense
TTGTCTCCAATCTCCATTATTTATA 687 705 876 Antisense
TAGAAGCCATTCACCATGCTCAACA 137 653 899 Antisense
CACTTGGTGAAGCAGATCTCGAAAT 505 193 922 Antisense
TGCTGTACAAATTATGATGCTCCAA 420 583 1060 Antisense
AAGCCAAGACAATCCCAGTCATCAC 203 149 1193 Antisense
Sequence Source Affymetrix Proprietary Database