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[186008_at]

Description F54B11.11 /REP_DB=WormBase Gene ID /WP=CE05935 /TR=Q20747 /GB=CAA94144.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 50      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 30.8
(-3)
A 		91.2
(3)
A 		87.9
(2.7)
A 		71.5
(1)
A 		60
B 60.4
(2.2)
A 		66.1
(3)
A 		59
(2)
P 		25.3
(-3)
A 		41
C 43.3
(-0.6)
A 		79.5
(2.2)
A 		89.5
(3)
P 		13.2
(-3)
A 		76
avr 44.8
(-1.8) 		78.9
(3) 		78.8
(3) 		36.7
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 87.9
(3)
A 		73.6
(1)
P 		80.1
(1.9)
A 		53.7
(-1.7)
A 		58.6
(-1)
A 		44.2
(-3)
A 		44
B 43.9
(1.3)
A 		53.4
(2.5)
A 		36.8
(0.5)
A 		57.9
(3)
A 		32.3
(-0.1)
A 		7.8
(-3)
A 		50
C 64.3
(0.2)
A 		66.7
(0.4)
A 		95
(3)
A 		62.5
(0.1)
A 		37.8
(-2.2)
A 		28.8
(-3)
A 		66
avr 65.4
(2.3) 		64.6
(2.2) 		70.6
(3) 		58
(1.3) 		42.9
(-0.8) 		26.9
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 11.2
(-2.7)
A 		19.8
(1.5)
A 		23
(3)
A 		10.5
(-3)
A 		13
B 19.3
(3)
A 		16.3
(1.7)
A 		13.7
(0.6)
P 		5.4
(-3)
A 		14
C 14.3
(-0.5)
A 		22.8
(1.3)
A 		31.2
(3)
P 		2.2
(-3)
A 		29
avr 14.9
(0.2) 		19.6
(1.9) 		22.6
(3) 		6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.2
(-0.9)
A 		26.2
(3)
P 		17.5
(-0.4)
A 		13.6
(-1.9)
A 		17.7
(-0.3)
A 		10.8
(-3)
A 		15
B 15.3
(2)
A 		17.8
(3)
A 		8.9
(-0.6)
A 		15.3
(2)
A 		13.1
(1.1)
A 		2.9
(-3)
A 		15
C 23.8
(2.8)
A 		20.3
(1.4)
A 		24.2
(3)
A 		12.6
(-1.8)
A 		12.2
(-2)
A 		9.7
(-3)
A 		15
avr 18.4
(1.7) 		21.4
(3) 		16.9
(1) 		13.8
(-0.4) 		14.3
(-0.1) 		7.8
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17836
Sequence Type Exemplar sequence
Representative Public ID F54B11.11 NCBI
Target Description F54B11.11 /REP_DB=WormBase Gene ID /WP=CE05935 /TR=Q20747 /GB=CAA94144.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077869 NCBI Caenorhabditis elegans F54B11.11 (F54B11.11) mRNA, complete cds. 11/11 None
SNAP00000008284 ENSEMBL cdna:SNAP chromosome:CEL140:X:13578732:13581396:1 9/11 None
GENEFINDER00000008304 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13578732:13582519:1 9/11 None
F54B11.11 ENSEMBL cdna:known chromosome:CEL140:X:13578702:13581647:1 gene:F54B11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13578731-13581647(+) 94.82 100.0
Public Domain and Genome References
Gene Title
Ensembl F54B11.11
Entrez Gene 186218 Entrez gene
SwissProt Q20747 EMBL-EBI
WormBase CE05935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94144 Hypothetical protein F54B11.11 [Caenorhabditis elegans] ref|NP_510270.1| F54B11.11 [Caenorhabditis elegans] 0.0
blast CAE63121 Hypothetical protein CBG07418 [Caenorhabditis briggsae] 6.0E-75
blast CAE63121 Hypothetical protein CBG07418 [Caenorhabditis briggsae] 7.0E-75
blast CAE66251 Hypothetical protein CBG11495 [Caenorhabditis briggsae] 5.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 3.1E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008304 1 601-620
Sequence
Target Sequence 
>C. ELEGANS:186008_AT
gtgaatttgacatacccaccagcattgaacagtagtgtgacatcgattggaaactatttg
acaacttctgcaaattttacaatgaggggttacatcacactttactatgaaattactgcg
gcatctggaacaactacgcaacctattttgagcaccatgactagctctacaacaaaaact
ttaacaagcactacaaccatcactacaacaaaagctaatatcttgaccacgacagctaca
actacgacaccgcccgtaacttctgctccagccacaacctttattacgcctgtaccattc
acaccaccagtcacgaactctacaacaatttattcctctaacactggatcaacgttgtcc
actactataggcctacccatcactcaagtatccgttcagacaacaactcagactgccccc
ttgaaagattataaaggattaaaggacgatccgttcttcaagtgctgtgcacggagtcag
gtacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAATTTGACATACCCACCAGCAT 465 481 1291 Antisense
TGAGGGGTTACATCACACTTTACTA 652 565 1373 Antisense
ATTACTGCGGCATCTGGAACAACTA 146 3 1402 Antisense
ACTACGCAACCTATTTTGAGCACCA 180 99 1423 Antisense
TAACAAGCACTACAACCATCACTAC 373 639 1472 Antisense
GACCACGACAGCTACAACTACGACA 65 385 1515 Antisense
TTTATTACGCCTGTACCATTCACAC 28 673 1570 Antisense
ACGTTGTCCACTACTATAGGCCTAC 29 95 1642 Antisense
TACCCATCACTCAAGTATCCGTTCA 180 649 1664 Antisense
TCAGACTGCCCCCTTGAAAGATTAT 103 623 1698 Antisense
GTGCTGTGCACGGAGTCAGGTACAC 160 479 1752 Antisense
Sequence Source Affymetrix Proprietary Database