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[186007_at]

Description C28C12.1 /REP_DB=WormBase Gene ID /WP=CE04108 /TR=Q18283 /GB=AAB37544.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 21.4
(3)
A 		18.3
(1.2)
A 		11
(-3)
A 		20.3
(2.4)
A 		10
B 16.8
(1.4)
A 		8.4
(-1.5)
A 		21.3
(3)
A 		4.2
(-3)
A 		17
C 2.5
(-3)
A 		2.7
(-2.9)
A 		3.3
(-2.8)
A 		23.3
(3)
A 		21
avr 13.6
(0.7) 		9.8
(-3) 		11.9
(-0.9) 		15.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.5
(-3)
A 		35.4
(3)
A 		25.6
(0.5)
A 		22.1
(-0.3)
A 		18.3
(-1.3)
A 		27
(0.9)
A 		24
B 13.6
(-3)
A 		28.4
(2.4)
A 		27.8
(2.2)
A 		30
(3)
A 		27.2
(2)
A 		28.3
(2.4)
A 		16
C 23.7
(0.1)
A 		17.5
(-0.9)
A 		3.7
(-3)
A 		19.1
(-0.6)
A 		42.7
(3)
P 		17.9
(-0.8)
A 		39
avr 16.3
(-3) 		27.1
(1.9) 		19
(-1.8) 		23.7
(0.4) 		29.4
(3) 		24.4
(0.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.8
(3)
A 		4
(-1.7)
A 		2.9
(-3)
A 		3
(-2.9)
A 		5
B 5.3
(3)
A 		2.1
(-1.4)
A 		4.9
(2.5)
A 		0.9
(-3)
A 		4
C 0.8
(-3)
A 		0.8
(-3)
A 		1.1
(-2.4)
A 		3.9
(3)
A 		3
avr 4.6
(3) 		2.3
(-3) 		3
(-1.2) 		2.6
(-2.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.1
(-3)
A 		12.6
(3)
A 		5.6
(-1)
A 		5.6
(-1)
A 		5.5
(-1.1)
A 		6.6
(-0.4)
A 		11
B 4.7
(-3)
A 		9.4
(1.5)
A 		6.8
(-1)
A 		7.9
(0)
A 		11
(3)
A 		10.5
(2.5)
A 		6
C 8.8
(0.7)
A 		5.3
(-1)
A 		0.9
(-3)
A 		3.8
(-1.7)
A 		13.8
(3)
P 		6
(-0.6)
A 		13
avr 5.2
(-2.2) 		9.1
(1.9) 		4.4
(-3) 		5.8
(-1.5) 		10.1
(3) 		7.7
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9810
Sequence Type Exemplar sequence
Representative Public ID C28C12.1 NCBI
Target Description C28C12.1 /REP_DB=WormBase Gene ID /WP=CE04108 /TR=Q18283 /GB=AAB37544.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069053(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069053 NCBI Caenorhabditis elegans C28C12.1 (C28C12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000012177 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8501664:8502761:1 10/11 None
C28C12.1 ENSEMBL cdna:known chromosome:CEL140:IV:8501664:8502920:1 gene:C28C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012171 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8501669-8502926(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C28C12.1
Entrez Gene 182976 Entrez gene
SwissProt Q18283 EMBL-EBI
WormBase CE04108 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37544 Hypothetical protein C28C12.1 [Caenorhabditis elegans] ref|NP_501454.1| C28C12.1 [Caenorhabditis elegans] 2.0E-65
blast AAB37544 Hypothetical protein C28C12.1 [Caenorhabditis elegans] ref|NP_501454.1| C28C12.1 [Caenorhabditis elegans] 3.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501454.1 1 4-23
C28C12.1 1 4-23
GENEFINDER00000012177 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:186007_AT
ggaattttgcatattttgccactttatgttttgacaatgtgcataaagaagaaaacatct
tcaaagtctagattatcacctaatggaacacctaagccggcatctccagcactcagtcca
cttgatttgactcctgcaaagaaagtagaagaaaaagtaattgaggaaaaaaaggttgaa
aataatccaaaaaaagaagaagagccagtgaaagatggaaaagaagttgtacaggatcaa
ccaaagaaatcatcaagagaaaaggatatgatgttgaaagagaaaacggcaatcgatttt
agtggagacgataataagaaaaaggagacgatgcaagtttcaaaaacaaagtctgcaaga
aataacaaacagaaaagcgacgtaaaggaaagtgctaccccaggagaagacgatgagaag
gaaaaaacgaaaacggaaggagcaaatggaaaaactgatgaggaaggaacagagaagaag
gaaccaacaatgaccgagtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTTTGCATATTTTGCCACTTT 505 533 37 Antisense
TATTTTGCCACTTTATGTTTTGACA 227 663 48 Antisense
CAAAGTCTAGATTATCACCTAATGG 383 191 98 Antisense
TAATGGAACACCTAAGCCGGCATCT 138 637 117 Antisense
CCAGCACTCAGTCCACTTGATTTGA 355 273 142 Antisense
GTCCACTTGATTTGACTCCTGCAAA 429 477 152 Antisense
AACGGCAATCGATTTTAGTGGAGAC 630 143 321 Antisense
AGGAGACGATGCAAGTTTCAAAAAC 281 55 359 Antisense
GACGTAAAGGAAAGTGCTACCCCAG 27 377 415 Antisense
GTGCTACCCCAGGAGAAGACGATGA 149 481 428 Antisense
AGGAACCAACAATGACCGAGTCGAG 246 53 515 Antisense
Sequence Source Affymetrix Proprietary Database