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[186006_at]

Description Y25C1A.3 /REP_DB=WormBase Gene ID /WP=CE21470 /TR=Q9TYL3 /GB=AAD12833.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 48.7
(2.4)
A 		12.9
(-2.3)
A 		7.8
(-3)
A 		53.5
(3)
A 		46
B 7.6
(-2.9)
A 		19.7
(3)
A 		7.4
(-3)
A 		12.3
(-0.6)
A 		12
C 32.9
(0.4)
A 		11
(-3)
A 		12.9
(-2.7)
A 		49.6
(3)
A 		39
avr 29.7
(1.2) 		14.5
(-1.9) 		9.4
(-3) 		38.5
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 44.3
(3)
A 		2.6
(-3)
A 		6.6
(-2.4)
A 		10.2
(-1.9)
A 		25.7
(0.3)
A 		6.6
(-2.4)
A 		42
B 28
(3)
A 		8.9
(-1.3)
A 		2.3
(-2.8)
A 		3.3
(-2.6)
A 		5
(-2.2)
A 		1.4
(-3)
A 		27
C 2.2
(-2.5)
A 		4.7
(-1.3)
A 		13.1
(3)
A 		10.8
(1.8)
A 		1.3
(-3)
A 		2.8
(-2.2)
A 		12
avr 24.8
(3) 		5.4
(-2.5) 		7.3
(-2) 		8.1
(-1.7) 		10.7
(-1) 		3.6
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.7
(3)
A 		2.8
(-2.7)
A 		2
(-3)
A 		7.8
(-0.8)
A 		16
B 2.4
(-1.7)
A 		4.9
(3)
A 		1.7
(-3)
A 		2.6
(-1.3)
A 		3
C 10.9
(3)
A 		3.2
(-3)
A 		4.5
(-2)
A 		8.4
(1.1)
A 		8
avr 10.3
(3) 		3.6
(-2.3) 		2.7
(-3) 		6.3
(-0.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.2
(3)
A 		0.9
(-3)
A 		1.4
(-2.6)
A 		2.6
(-1.6)
A 		7.7
(2.6)
A 		1.6
(-2.4)
A 		7
B 9.8
(3)
A 		2.9
(-1.5)
A 		0.6
(-2.9)
A 		0.9
(-2.7)
A 		2
(-2)
A 		0.5
(-3)
A 		9
C 0.8
(-2.2)
A 		1.4
(-0.9)
A 		3.3
(3)
A 		2.2
(0.7)
A 		0.4
(-3)
A 		0.9
(-2)
A 		3
avr 6.3
(3) 		1.7
(-2.2) 		1.8
(-2.1) 		1.9
(-2) 		3.4
(-0.3) 		1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4945
Sequence Type Exemplar sequence
Representative Public ID Y25C1A.3 NCBI
Target Description Y25C1A.3 /REP_DB=WormBase Gene ID /WP=CE21470 /TR=Q9TYL3 /GB=AAD12833.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062046 NCBI Caenorhabditis elegans Y25C1A.3 (Y25C1A.3) mRNA, complete cds. 11/11 None
SNAP00000041885 ENSEMBL cdna:SNAP chromosome:CEL140:II:3106105:3108027:1 11/11 None
GENEFINDER00000041902 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3106105:3108809:1 11/11 None
Y25C1A.3 ENSEMBL cdna:known chromosome:CEL140:II:3106060:3108027:1 gene:Y25C1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3106058-3108026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y25C1A.3
Entrez Gene 189536 Entrez gene
SwissProt Q9TYL3 EMBL-EBI
WormBase CE21470 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_494447 Y25C1A.3 [Caenorhabditis elegans] gb|AAD12833.1| Hypothetical protein Y25C1A.3 [Caenorhabditis elegans] 1.0E-136
blast NP_494447 Y25C1A.3 [Caenorhabditis elegans] gb|AAD12833.1| Hypothetical protein Y25C1A.3 [Caenorhabditis elegans] 1.0E-135
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 8.0E-97
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 7.0E-93
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 2.0E-82
blast NP_494446 Y25C1A.4 [Caenorhabditis elegans] gb|AAD12832.1| Hypothetical protein Y25C1A.4 [Caenorhabditis elegans] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:186006_AT
tgccgcccagatcgatgctgaacgggcttgtcaagccgctggaggagctctcactgggct
tcaaaaccaggatgaagccttgtatattcaatcatctcttctatcgcaaatcaaacagcc
tagtgcctcggtatggattggaatcaagagaaaagcatcatgtgtcggtaaaccacaaga
tgccacctgcacaagaacacaatcgttcgaatggacagacgactcagccgatggagtaaa
cggcatggttttccaaaaaggacagccggacaacggtggcaaagccctaaaccaggactg
tgcactgcttttggcttccagaacaccaaccattaaagcaggaggaacatattatgctgc
acaaatggaagatgtcaattgtattgccacttttcatgcggcaaacgcggctcgtaagac
aggaggttatgcttgcggacagcaacccaaaacgtgtcagccaggatggaagttcttcga
tcgaccaactggaggatggtgcatgaaagttttcactggattccacgagtatcaagccga
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCCCAGATCGATGCTGAACGG 360 581 1206 Antisense
TGTCAAGCCGCTGGAGGAGCTCTCA 202 557 1234 Antisense
ATCATCTCTTCTATCGCAAATCAAA 117 31 1296 Antisense
TCAAACAGCCTAGTGCCTCGGTATG 694 627 1316 Antisense
ATGCCACCTGCACAAGAACACAATC 300 41 1385 Antisense
ATGGACAGACGACTCAGCCGATGGA 55 53 1416 Antisense
AAACCAGGACTGTGCACTGCTTTTG 599 125 1494 Antisense
ACTGCTTTTGGCTTCCAGAACACCA 317 97 1509 Antisense
AATTGTATTGCCACTTTTCATGCGG 367 179 1582 Antisense
TTCATGCGGCAAACGCGGCTCGTAA 403 687 1598 Antisense
GATTCCACGAGTATCAAGCCGACGC 139 433 1724 Antisense
Sequence Source Affymetrix Proprietary Database