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[186005_at]

Description C16C4.12 /REP_DB=WormBase Gene ID /WP=CE08208 /TR=O16560 /GB=AAB93657.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 06      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.7
(-3)
A 		3.8
(-2)
A 		14.1
(3)
A 		2.7
(-2.5)
A 		12
B 12.4
(3)
A 		1.2
(-3)
A 		2.4
(-2.4)
A 		5.5
(-0.7)
A 		11
C 6.2
(-1.7)
A 		1.8
(-2.8)
A 		1
(-3)
A 		24.4
(3)
A 		23
avr 6.8
(0.1) 		2.3
(-3) 		5.8
(-0.6) 		10.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.3
(3)
A 		6.1
(-0.1)
A 		3
(-1.9)
A 		1.7
(-2.7)
A 		4.4
(-1.1)
A 		1.2
(-3)
A 		10
B 2.7
(-2.3)
A 		3.3
(-2)
A 		4.5
(-1.4)
A 		14
(3)
A 		1.1
(-3)
A 		3.6
(-1.8)
A 		13
C 22.4
(3)
A 		15.2
(0.9)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		4.3
(-2.2)
A 		14.9
(0.8)
A 		21
avr 12.1
(3) 		8.2
(0.4) 		3.1
(-3) 		5.7
(-1.3) 		3.3
(-2.9) 		6.6
(-0.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.6)
A 		0.8
(-2.3)
A 		3.7
(3)
A 		0.4
(-3)
A 		3
B 4
(3)
A 		0.3
(-3)
A 		0.6
(-2.5)
A 		1.2
(-1.5)
A 		4
C 2
(-0.3)
A 		0.5
(-2.7)
A 		0.3
(-3)
A 		4.1
(3)
A 		4
avr 2.2
(3) 		0.5
(-3) 		1.5
(0.5) 		1.9
(1.9) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(2.7)
A 		2.2
(3)
A 		0.6
(-2.1)
A 		0.4
(-2.7)
A 		1.3
(0.2)
A 		0.3
(-3)
A 		2
B 0.9
(-2.3)
A 		1.1
(-1.9)
A 		1.1
(-1.9)
A 		3.7
(3)
A 		0.5
(-3)
A 		1.4
(-1.3)
A 		3
C 8.3
(3)
A 		4.6
(0.2)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		1.4
(-2.2)
A 		5
(0.5)
A 		8
avr 3.8
(3) 		2.6
(0.7) 		0.7
(-3) 		1.5
(-1.5) 		1.1
(-2.2) 		2.2
(-0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4584
Sequence Type Exemplar sequence
Representative Public ID C16C4.12 NCBI
Target Description C16C4.12 /REP_DB=WormBase Gene ID /WP=CE08208 /TR=O16560 /GB=AAB93657.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061709 NCBI Caenorhabditis elegans C16C4.12 (C16C4.12) mRNA, complete cds. 11/11 None
GENEFINDER00000026924 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1883598:1886481:-1 11/11 None
C16C4.12 ENSEMBL cdna:known chromosome:CEL140:II:1885441:1886481:-1 gene:C16C4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026905 8/11 Cross Hyb Matching Probes None
SNAP00000026906 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1885439-1886480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.12
Entrez Gene 182666 Entrez gene
SwissProt O16560 EMBL-EBI
WormBase CE08208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93656 Hypothetical protein C16C4.11 [Caenorhabditis elegans] ref|NP_494109.1| C16C4.11 [Caenorhabditis elegans] 1.0E-166
blast AAB93657 Hypothetical protein C16C4.12 [Caenorhabditis elegans] ref|NP_494110.1| C16C4.12 [Caenorhabditis elegans] 1.0E-154
blast AAB93657 Hypothetical protein C16C4.12 [Caenorhabditis elegans] ref|NP_494110.1| C16C4.12 [Caenorhabditis elegans] 1.0E-149
blast AAB71075 Hypothetical protein ZK250.6 [Caenorhabditis elegans] ref|NP_494136.1| ZK250.6 [Caenorhabditis elegans] 1.0E-140
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 9.0E-84
blast AAB93655 Hypothetical protein C16C4.10 [Caenorhabditis elegans] ref|NP_494108.1| C16C4.10 [Caenorhabditis elegans] 1.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 9.0E-37
Pfam IPR002083 EMBL-EBI MATH 1.6E-52
Pfam IPR002083 EMBL-EBI MATH 2.9E-38
Pfam IPR002083 EMBL-EBI MATH 9.9E-49
Sequence
Target Sequence 
>C. ELEGANS:186005_AT
agacggaagctcttggttttgataaatttgttagttggaaggatttggagagtgattatg
tggttgatgatagtgttgtagttgaaactcatgtcaggatagttaaagaaaccgaatctc
cgtgcattgaatacaaaaaccaaaaaacatttctactgaatcacactgttaaaaatgttt
cgagaattatagatggaagcgactatttcacaaaaatagaaaatcgatttaatattccat
ggcaattaaaaattcaaagaagaaatggattttttggaatatttttacactgcaataaag
aaatgtccaatagaagcaattggactatcgcagttgacttcacgctgaaactagtctcta
caaatggtcagtgcttaacttcaaatatgacatctgttttcaacgagccagatggttacg
ggctctttaaatttataagatgggatgatatggaggagaagtacctggtgaacgatagta
tcggagttgaagctcgtgtcaagattattaaaatgactggatgtaacgacattgaagacc
tggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGGAAGCTCTTGGTTTTGATAA 430 69 263 Antisense
AAAGAAACCGAATCTCCGTGCATTG 281 117 367 Antisense
ACCGAATCTCCGTGCATTGAATACA 225 89 373 Antisense
GACTATCGCAGTTGACTTCACGCTG 6 373 585 Antisense
CTTCACGCTGAAACTAGTCTCTACA 86 221 600 Antisense
TAGTCTCTACAAATGGTCAGTGCTT 444 653 614 Antisense
GGTCAGTGCTTAACTTCAAATATGA 276 501 628 Antisense
ATGACATCTGTTTTCAACGAGCCAG 645 43 649 Antisense
GCCAGATGGTTACGGGCTCTTTAAA 170 281 669 Antisense
GAAGTACCTGGTGAACGATAGTATC 660 329 720 Antisense
ATGTAACGACATTGAAGACCTGGAA 633 45 783 Antisense
Sequence Source Affymetrix Proprietary Database