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[186004_at]

Description W09G10.5 /REP_DB=WormBase Gene ID /WP=CE14772 /TR=O16641 /GB=AAB66113.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.9
(-3)
A 		4.7
(-1.4)
A 		3.4
(-2.6)
A 		9.6
(3)
A 		7
B 3.5
(-3)
A 		3.8
(-2.3)
A 		3.5
(-3)
A 		5.9
(3)
A 		2
C 6.4
(3)
A 		4.8
(-2.1)
A 		4.5
(-3)
A 		4.7
(-2.4)
A 		2
avr 4.3
(-2) 		4.4
(-1.8) 		3.8
(-3) 		6.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7.5
(3)
A 		5.5
(0.2)
A 		5.4
(0.1)
A 		3.2
(-3)
A 		3.4
(-2.7)
A 		3.6
(-2.4)
A 		4
B 4.7
(2.6)
A 		4.9
(3)
A 		3.6
(0.4)
A 		2.8
(-1.2)
A 		2.9
(-1)
A 		1.9
(-3)
A 		3
C 2.8
(-0.6)
A 		3.4
(1.8)
A 		2.7
(-1)
A 		3.7
(3)
A 		3
(0.2)
A 		2.2
(-3)
A 		2
avr 5
(3) 		4.6
(2) 		3.9
(0.3) 		3.2
(-1.5) 		3.1
(-1.8) 		2.6
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.1
(-0.6)
A 		1
(-1.8)
A 		0.9
(-3)
A 		1.4
(3)
A 		0
B 1.1
(0.6)
A 		0.9
(-1.8)
A 		0.8
(-3)
A 		1.3
(3)
A 		1
C 2.1
(3)
A 		1.4
(-0.2)
A 		1.6
(0.7)
A 		0.8
(-3)
A 		1
avr 1.4
(3) 		1.1
(-3) 		1.1
(-3) 		1.2
(-1) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.4
(-0)
A 		2
(3)
A 		1.2
(-1)
A 		0.8
(-3)
A 		1
(-2)
A 		0.9
(-2.5)
A 		1
B 1.6
(3)
A 		1.6
(3)
A 		0.9
(-1.7)
A 		0.8
(-2.3)
A 		1.2
(0.3)
A 		0.7
(-3)
A 		1
C 1
(3)
A 		1
(3)
A 		0.7
(-3)
A 		0.8
(-1)
A 		1
(3)
A 		0.7
(-3)
A 		0
avr 1.3
(1.3) 		1.5
(3) 		0.9
(-2.1) 		0.8
(-3) 		1.1
(-0.4) 		0.8
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4967
Sequence Type Exemplar sequence
Representative Public ID W09G10.5 NCBI
Target Description W09G10.5 /REP_DB=WormBase Gene ID /WP=CE14772 /TR=O16641 /GB=AAB66113.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062166 NCBI Caenorhabditis elegans W09G10.5 (W09G10.5) mRNA, complete cds. 11/11 None
SNAP00000024964 ENSEMBL cdna:SNAP chromosome:CEL140:II:3519592:3520314:1 10/11 None
W09G10.5 ENSEMBL cdna:known chromosome:CEL140:II:3519489:3520416:1 gene:W09G10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024973 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3519590-3520415(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G10.5
Entrez Gene 173699 Entrez gene
SwissProt O16641 EMBL-EBI
WormBase CE14772 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66113 Hypothetical protein W09G10.5 [Caenorhabditis elegans] ref|NP_494567.1| W09G10.5 [Caenorhabditis elegans] 5.0E-98
blast AAB66113 Hypothetical protein W09G10.5 [Caenorhabditis elegans] ref|NP_494567.1| W09G10.5 [Caenorhabditis elegans] 2.0E-87
blast AAG24219 Hypothetical protein W10G11.12 [Caenorhabditis elegans] ref|NP_494586.1| W10G11.12 [Caenorhabditis elegans] 2.0E-54
blast CAE70944 Hypothetical protein CBG17752 [Caenorhabditis briggsae] 1.0E-50
blast AAG24219 Hypothetical protein W10G11.12 [Caenorhabditis elegans] ref|NP_494586.1| W10G11.12 [Caenorhabditis elegans] 6.0E-49
blast CAE70945 Hypothetical protein CBG17754 [Caenorhabditis briggsae] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.0E-7
Sequence
Target Sequence 
>C. ELEGANS:186004_AT
gtgttgctcagcagttctagccagagttccagtggcgaaaaactgtccaacgggctggac
gtggttcttaagatccagaggtggatggtgcatgaaggtattcacagaagccctgaatca
accaagtgctgaagccaagtgcaaagctgccgaagcggtgttggcgggaattcaaaacaa
ggaggaggttgcctggatgtccaaagaactgaccgggaccatgtggatcggcacaaagcg
tacaccaccttgcatgaactccggtgtgaccaaacaatgctctcagatcacctcatacta
ttggacagatggctcgactgtcggagttcagggtttctactggaattccggagagcccaa
taatcagggtggccaaggctgtgcaaaactgataacctcctcaagtgttctggacgatgt
cgcatgtaccactgaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTGCTCAGCAGTTCTAGCCAGA 667 483 42 Antisense
GGCGAAAAACTGTCCAACGGGCTGG 276 403 75 Antisense
CGGGCTGGACGTGGTTCTTAAGATC 357 243 92 Antisense
AAGCTGCCGAAGCGGTGTTGGCGGG 496 149 185 Antisense
GGAGGAGGTTGCCTGGATGTCCAAA 308 515 222 Antisense
GAACTGACCGGGACCATGTGGATCG 392 347 247 Antisense
ACACCACCTTGCATGAACTCCGGTG 357 109 283 Antisense
AAACAATGCTCTCAGATCACCTCAT 375 129 313 Antisense
GATGGCTCGACTGTCGGAGTTCAGG 604 405 349 Antisense
GATAACCTCCTCAAGTGTTCTGGAC 669 421 432 Antisense
GATGTCGCATGTACCACTGAACTAA 137 409 457 Antisense
Sequence Source Affymetrix Proprietary Database