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[186003_at]

Description F31F4.11 /REP_DB=WormBase Gene ID /WP=CE09831 /TR=O17129 /GB=AAG24090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 7
(-3)
A 		16.8
(3)
A 		15.2
(2)
A 		9.1
(-1.7)
A 		10
B 6.6
(-3)
A 		48.9
(2.3)
A 		54.1
(3)
A 		12.8
(-2.2)
A 		48
C 12
(-3)
A 		18
(-2)
A 		14.6
(-2.6)
A 		48.6
(3)
A 		37
avr 8.5
(-3) 		27.9
(3) 		28
(3) 		23.5
(1.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 78.5
(3)
A 		14
(-2.4)
A 		60.6
(1.5)
A 		7.7
(-2.9)
A 		6.6
(-3)
A 		13
(-2.5)
A 		72
B 36.1
(-0)
A 		34.7
(-0.2)
A 		66
(3)
A 		59.5
(2.3)
A 		10.3
(-2.7)
A 		6.9
(-3)
A 		59
C 9.3
(-2)
A 		22.6
(1.8)
A 		26.6
(3)
A 		18.9
(0.8)
A 		6
(-3)
A 		7.1
(-2.7)
A 		21
avr 41.3
(1.6) 		23.8
(-0.8) 		51.1
(3) 		28.7
(-0.1) 		7.6
(-3) 		9
(-2.8) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.5
(-0.3)
A 		3.6
(2.1)
A 		4
(3)
A 		1.3
(-3)
A 		3
B 2.1
(-3)
A 		12.1
(2.8)
A 		12.5
(3)
A 		2.7
(-2.7)
A 		10
C 4
(-3)
A 		5.2
(-1.3)
A 		5.1
(-1.4)
A 		8.2
(3)
A 		4
avr 2.9
(-3) 		7
(2.7) 		7.2
(3) 		4.1
(-1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.5
(3)
A 		5
(-1.6)
A 		13.2
(2.4)
A 		2
(-3)
A 		2
(-3)
A 		3.2
(-2.4)
A 		13
B 12.5
(1.4)
A 		11.6
(1)
A 		16
(3)
A 		15.8
(2.9)
A 		4.2
(-2.3)
A 		2.6
(-3)
A 		13
C 3.4
(-1.2)
A 		6.9
(3)
A 		6.8
(2.9)
A 		3.8
(-0.7)
A 		1.9
(-3)
A 		2.4
(-2.4)
A 		5
avr 10.1
(1.8) 		7.8
(0.3) 		12
(3) 		7.2
(-0.1) 		2.7
(-3) 		2.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14971
Sequence Type Exemplar sequence
Representative Public ID F31F4.11 NCBI
Target Description F31F4.11 /REP_DB=WormBase Gene ID /WP=CE09831 /TR=O17129 /GB=AAG24090.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070883
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F31F4.11 ENSEMBL cdna:known chromosome:CEL140:V:662309:664230:-1 gene:F31F4.11 None
NM_070883 NCBI Caenorhabditis elegans F31F4.11 (F31F4.11) mRNA, complete cds. None
GENEFINDER00000012377 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:661140:664224:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012364 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:662308-664230(-) 82.49 100.0
Public Domain and Genome References
Gene Title
Ensembl F31F4.11
Entrez Gene 185169 Entrez gene
SwissProt O17129 EMBL-EBI
WormBase CE35298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503284 F31F4.11 [Caenorhabditis elegans] gb|AAG24090.2| Hypothetical protein F31F4.11 [Caenorhabditis elegans] 1.0E-169
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 1.0E-128
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 1.0E-127
blast NP_503284 F31F4.11 [Caenorhabditis elegans] gb|AAG24090.2| Hypothetical protein F31F4.11 [Caenorhabditis elegans] 1.0E-121
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 2.0E-87
blast CAB07352 Hypothetical protein F11A5.5 [Caenorhabditis elegans] ref|NP_507085.1| F11A5.5 [Caenorhabditis elegans] 6.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-87
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503284.2 1 7-29
F31F4.11 1 7-29
GENEFINDER00000012377 5 7-29,423-440,459-481,496-518,539-561
Sequence
Target Sequence 
>C. ELEGANS:186003_AT
tatgcgacagaccccaagtttatgaaaaatgccgtaaagttcctaaaggaaaaagaaaat
tatagtaagaaaaatcaaaaaattgttctatttggcgatgatttcaaatttatgagaaat
ctatttagcgaagcaaaagtctcgacggatgctcatgaaagtgtagaatactatatttct
caaaattcggcaattgatgacttcctttactccgcgtacaattgtgacgaggttttaatc
acaggtaatgcccaccagccgacatcgatgcatgtcgcaaatttcaataatctggataca
ccccgctccacatttggctggtggctaggctatttctcaaaaggagacaaggtttactat
ttggatatcaagcacgctcgggaccgtgtgtacgacaatggagagatagcagaaaatgac
ttttttttaccgcactggacgccgttgaaatttgcagctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCGACAGACCCCAAGTTTATGA 422 657 700 Antisense
AAAGTCTCGACGGATGCTCATGAAA 153 123 835 Antisense
GGCAATTGATGACTTCCTTTACTCC 47 535 888 Antisense
TTCCTTTACTCCGCGTACAATTGTG 234 699 901 Antisense
TTAATCACAGGTAATGCCCACCAGC 413 683 934 Antisense
CCACCAGCCGACATCGATGCATGTC 52 275 951 Antisense
TTCAATAATCTGGATACACCCCGCT 91 685 982 Antisense
GCTGGTGGCTAGGCTATTTCTCAAA 270 295 1016 Antisense
TCAAGCACGCTCGGGACCGTGTGTA 233 631 1067 Antisense
TTACCGCACTGGACGCCGTTGAAAT 266 669 1126 Antisense
GACGCCGTTGAAATTTGCAGCTGCC 386 381 1137 Antisense
Sequence Source Affymetrix Proprietary Database