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[186002_at] 7TM chemoreceptor, srg family

Description W02F12.7 /REP_DB=WormBase Gene ID /WP=CE14484 /TR=O45150 /GB=AAC04463.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 0      6grp_total > 09      4grp_total > 11      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 72.1
(-1.8)
P 		62.9
(-2.2)
A 		47.9
(-3)
A 		166.2
(3)
P 		118
B 69.4
(-1)
A 		74.6
(-0.5)
P 		45.4
(-3)
A 		116.2
(3)
P 		71
C 58.5
(-1.8)
P 		68.4
(-1.2)
P 		37.8
(-3)
A 		138.8
(3)
P 		101
avr 66.7
(-1.6) 		68.6
(-1.5) 		43.7
(-3) 		140.4
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 112.7
(3)
P 		63.9
(-2.5)
P 		64.4
(-2.5)
P 		63
(-2.6)
P 		90.3
(0.5)
P 		59.8
(-3)
A 		53
B 67.7
(2.1)
P 		62.7
(1.4)
P 		74.1
(3)
P 		30.6
(-3)
A 		56.1
(0.5)
P 		49.5
(-0.4)
P 		44
C 49.9
(-3)
A 		61.3
(-2)
P 		49.4
(-3)
A 		123.6
(3)
P 		58.1
(-2.3)
P 		56.9
(-2.4)
P 		74
avr 76.8
(3) 		62.6
(-1) 		62.6
(-1) 		72.4
(1.8) 		68.2
(0.6) 		55.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 26.2
(3)
P 		13.6
(-2.5)
A 		12.5
(-3)
A 		24.3
(2.2)
P 		14
B 22.1
(1.9)
A 		18.4
(0.3)
P 		10.5
(-3)
A 		24.8
(3)
P 		14
C 19.4
(0.6)
P 		19.7
(0.8)
P 		13.2
(-3)
A 		23.4
(3)
P 		10
avr 22.6
(2.2) 		17.2
(-0.5) 		12.1
(-3) 		24.2
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 20.8
(0.1)
P 		22.7
(0.9)
P 		14
(-3)
P 		16
(-2.1)
P 		27.3
(3)
P 		14.6
(-2.7)
A 		13
B 23.6
(3)
P 		20.9
(2)
P 		18
(0.8)
P 		8.1
(-3)
A 		22.8
(2.7)
P 		18.4
(1)
P 		16
C 18.5
(-0.1)
A 		18.7
(-0)
P 		12.6
(-3)
A 		24.9
(3)
P 		18.8
(0)
P 		19.1
(0.2)
P 		12
avr 21
(1.5) 		20.8
(1.4) 		14.9
(-3) 		16.3
(-2) 		23
(3) 		17.4
(-1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11743
Sequence Type Exemplar sequence
Representative Public ID W02F12.7 NCBI
Target Description W02F12.7 /REP_DB=WormBase Gene ID /WP=CE14484 /TR=O45150 /GB=AAC04463.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072301(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072301 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-30) (srg-30) mRNA, complete cds. 10/11 None
W02F12.7 ENSEMBL cdna:known chromosome:CEL140:V:6719449:6720891:-1 gene:W02F12.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6719248-6721615(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-30
Ensembl W02F12.7
Entrez Gene 189125 Entrez gene
SwissProt O45150 EMBL-EBI
WormBase CE38112 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504702 Serpentine Receptor, class G (gamma) family member (srg-30) [Caenorhabditis elegans] sp|O45150|SRG30_CAEEL Serpentine receptor class gamma-30 (Protein srg-30) gb|AAC04463.3| Serpentine receptor, class g (gamma) protein 30 [Caenorhabditis elegans] 1.0E-146
blast CAE71939 Hypothetical protein CBG19003 [Caenorhabditis briggsae] 2.0E-73
blast CAE73524 Hypothetical protein CBG20987 [Caenorhabditis briggsae] 7.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504702.3 6 13-35,55-77,136-158,188-210,223-245,260-282
W02F12.7 6 13-35,55-77,136-158,188-210,223-245,260-282
Sequence
Target Sequence 
>C. ELEGANS:186002_AT
gtgattgttttctgcattctatgcccattgcttggcgtctggacagcgtttctttcggat
agtcgatttgttccatttcagggaggatttattcatgagactatgatggagtatcactgg
ataacagtctctcagttctcagtgatcatatcttccataacaattgtcactgtatgcata
tgttccgtgatctctatgttgtgcatttcaaggacacatgctgaaaataagcacaccgaa
caatctctgacagcctcagctcttgcgatgagcatcttctacgtgtttgctctttcgatg
aacatttactgtcaaaaagcgcatgcttcatctttagagatgcttgaattttggaaagcc
ctgactgcattcgcatttgatatcattctagtttgccctccagtcatcatgttatgcttg
aacgtcagactacgaatcaacgtcttctccgttgatactagaccaacttctccaaaaagc
ctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATTGTTTTCTGCATTCTATGCC 399 485 655 Antisense
ATTCTATGCCCATTGCTTGGCGTCT 285 9 670 Antisense
TCTGGACAGCGTTTCTTTCGGATAG 65 605 692 Antisense
CAGTCTCTCAGTTCTCAGTGATCAT 568 207 779 Antisense
TGTTCCGTGATCTCTATGTTGTGCA 461 563 835 Antisense
TAAGCACACCGAACAATCTCTGACA 678 637 882 Antisense
CAGCCTCAGCTCTTGCGATGAGCAT 356 203 905 Antisense
GCCCTGACTGCATTCGCATTTGATA 138 287 1012 Antisense
TTGATATCATTCTAGTTTGCCCTCC 274 707 1031 Antisense
GCCCTCCAGTCATCATGTTATGCTT 604 285 1049 Antisense
GACCAACTTCTCCAAAAAGCCTGCG 303 383 1115 Antisense
Sequence Source Affymetrix Proprietary Database