[Home] | [Total List]

[186001_s_at]

Description Y41C4A.12 /REP_DB=WormBase Gene ID /WP=CE20252 /TR=Q9U2I3 /GB=CAB63358.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 81      6grp_total > 14      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 411
(3)
P 		412.7
(3)
P 		287.4
(-0.7)
P 		206.9
(-3)
P 		206
B 543.9
(3)
P 		242.6
(-3)
P 		299.2
(-1.9)
P 		282.8
(-2.2)
P 		301
C 306.6
(0.3)
P 		366
(3)
P 		311.8
(0.5)
P 		234.7
(-3)
P 		131
avr 420.5
(3) 		340.4
(0.3) 		299.5
(-1.1) 		241.5
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 274.7
(-0.3)
P 		349.6
(3)
P 		278.1
(-0.2)
P 		230.6
(-2.3)
P 		261.8
(-0.9)
P 		214.3
(-3)
P 		135
B 393.6
(3)
P 		302.5
(0.4)
P 		181.8
(-3)
P 		294.4
(0.2)
P 		230.8
(-1.6)
P 		186.6
(-2.9)
P 		212
C 325.8
(1.6)
P 		177.2
(-3)
P 		371.3
(3)
P 		344.1
(2.2)
P 		192.8
(-2.5)
P 		223
(-1.6)
P 		194
avr 331.4
(3) 		276.4
(0.3) 		277.1
(0.4) 		289.7
(1) 		228.5
(-2) 		208
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 149.7
(3)
P 		89.6
(-0)
P 		75.1
(-0.7)
P 		30.3
(-3)
P 		119
B 173.5
(3)
P 		59.9
(-3)
P 		69.3
(-2.5)
P 		60.3
(-3)
P 		114
C 101.5
(2.4)
P 		105.2
(2.7)
P 		108.7
(3)
P 		39.6
(-3)
P 		69
avr 141.6
(3) 		84.9
(-0.5) 		84.4
(-0.5) 		43.4
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 50.6
(-3)
P 		124.3
(3)
P 		60.6
(-2.2)
P 		58.5
(-2.4)
P 		79
(-0.7)
P 		52.2
(-2.9)
P 		74
B 137
(3)
P 		100.7
(0.7)
P 		44.1
(-3)
P 		78
(-0.8)
P 		93.8
(0.2)
P 		69.6
(-1.4)
P 		93
C 120.8
(3)
P 		54.1
(-3)
P 		94.5
(0.6)
P 		69.2
(-1.6)
P 		62.4
(-2.3)
P 		74.7
(-1.1)
P 		67
avr 102.8
(3) 		93
(1.4) 		66.4
(-2.9) 		68.6
(-2.5) 		78.4
(-0.9) 		65.5
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6134
Sequence Type Exemplar sequence
Representative Public ID Y41C4A.12 NCBI
Target Description Y41C4A.12 /REP_DB=WormBase Gene ID /WP=CE20252 /TR=Q9U2I3 /GB=CAB63358.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181970(11), NM_067118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181970 NCBI Caenorhabditis elegans Y41C4A.12b (Y41C4A.12) mRNA, complete cds. 11/11 None
NM_067118 NCBI Caenorhabditis elegans Y41C4A.12a (Y41C4A.12) mRNA, complete cds. 11/11 None
GENEFINDER00000034905 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11724013:11726554:-1 11/11 None
Y41C4A.12b ENSEMBL cdna:known chromosome:CEL140:III:11723940:11726554:-1 gene:Y41C4A.12 11/11 None
Y41C4A.12a ENSEMBL cdna:known chromosome:CEL140:III:11723943:11726566:-1 gene:Y41C4A.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034892 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11724008-11726550(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y41C4A.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56606 Hypothetical protein Y41C4A.12b [Caenorhabditis elegans] ref|NP_871699.1| Y41C4A.12b [Caenorhabditis elegans] 1.0E-154
blast CAB63358 Hypothetical protein Y41C4A.12a [Caenorhabditis elegans] ref|NP_499519.1| Y41C4A.12a [Caenorhabditis elegans] 1.0E-141
blast CAB63358 Hypothetical protein Y41C4A.12a [Caenorhabditis elegans] ref|NP_499519.1| Y41C4A.12a [Caenorhabditis elegans] 1.0E-129
blast CAD56606 Hypothetical protein Y41C4A.12b [Caenorhabditis elegans] ref|NP_871699.1| Y41C4A.12b [Caenorhabditis elegans] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:186001_S_AT
agaagccgtcgaagcctatgaccaacaaatttactcaagatgtgttcgactggtggaggg
cgcaaatagagagtctccagttgatatgtgcctaatctcccttgcccaccactcctacgc
agaaatggtgaacgcggcaagtggctcagacgatgctatgaaatttgcaaaatggtgggc
agaatttctggattccgttgaagctggacgaggtcacagtgagaaaatcgagctgctcga
ctatgaagcagtggcctatgagaaaattgtaaaattaggaggggttgcagacgttgagaa
gcttattgaggtggttgtcaggagttatgagatggtaacgcttctcaaccgtccatatca
catactatccttgcaaaagctcttccgtctgacaaatgtgctcagttcttccgaagttga
cttggaatccgacgcattttcctcggcgaaaactgtcgttctaaccggaattcaaaatgt
tcttcgcgatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCCGTCGAAGCCTATGACCAA 66 75 252 Antisense
GATGTGTTCGACTGGTGGAGGGCGC 630 407 290 Antisense
CCCACCACTCCTACGCAGAAATGGT 170 259 356 Antisense
TGAACGCGGCAAGTGGCTCAGACGA 585 573 380 Antisense
GAGATGGTAACGCTTCTCAACCGTC 386 373 580 Antisense
CAACCGTCCATATCACATACTATCC 504 187 597 Antisense
CAAAAGCTCTTCCGTCTGACAAATG 184 191 625 Antisense
GACAAATGTGCTCAGTTCTTCCGAA 367 365 642 Antisense
CTTGGAATCCGACGCATTTTCCTCG 237 213 672 Antisense
TTCCTCGGCGAAAACTGTCGTTCTA 533 695 690 Antisense
ATTCAAAATGTTCTTCGCGATCGGA 180 11 721 Antisense
Sequence Source Affymetrix Proprietary Database