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[185999_at]

Description C03G6.17 /REP_DB=WormBase Gene ID /WP=CE07891 /TR=O01460 /GB=AAB52316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 22      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 672
1 2 3 4 range
A 698.5
(2.3)
P 		297.1
(-2.2)
P 		220.3
(-3)
P 		763.6
(3)
P 		543
B 818
(2.7)
P 		285.2
(-2.5)
P 		229.6
(-3)
P 		853.3
(3)
P 		624
C 838.7
(2.5)
P 		266.1
(-2.6)
P 		223.2
(-3)
P 		892.6
(3)
P 		669
avr 785.1
(2.5) 		282.8
(-2.4) 		224.4
(-3) 		836.5
(3) 		612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 728.1
(3)
P 		617.8
(1.5)
P 		660
(2.1)
P 		594.6
(1.2)
P 		313.6
(-2.7)
P 		290.3
(-3)
P 		438
B 609.4
(3)
P 		523.3
(1.3)
P 		484.2
(0.5)
P 		502.5
(0.8)
P 		345
(-2.4)
P 		313.8
(-3)
P 		296
C 613.5
(2.8)
P 		574.6
(2.2)
P 		623.3
(3)
P 		585.7
(2.4)
P 		339.5
(-1.6)
P 		250.5
(-3)
P 		373
avr 650.3
(3) 		571.9
(1.7) 		589.2
(2) 		560.9
(1.5) 		332.7
(-2.2) 		284.9
(-3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 254.3
(3)
P 		64.5
(-2.8)
P 		57.6
(-3)
P 		111.8
(-1.3)
P 		197
B 260.9
(3)
P 		70.4
(-2.5)
P 		53.2
(-3)
P 		181.8
(0.7)
P 		208
C 277.6
(3)
P 		76.5
(-3)
P 		77.8
(-3)
P 		150.5
(-0.8)
P 		201
avr 264.3
(3) 		70.5
(-2.8) 		62.9
(-3) 		148
(-0.5) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 134.2
(-0.4)
P 		219.7
(3)
P 		143.7
(-0.1)
P 		150.8
(0.2)
P 		94.6
(-2)
P 		70.7
(-3)
P 		149
B 212
(3)
P 		174.2
(0.6)
P 		117.6
(-3)
P 		133.1
(-2)
P 		140.2
(-1.5)
P 		117
(-3)
P 		95
C 227.4
(3)
P 		175.3
(0.8)
P 		158.6
(0.1)
P 		117.8
(-1.6)
P 		109.9
(-1.9)
P 		83.8
(-3)
P 		144
avr 191.2
(3) 		189.7
(2.9) 		140
(-0.1) 		133.9
(-0.4) 		114.9
(-1.5) 		90.5
(-3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11740
Sequence Type Exemplar sequence
Representative Public ID C03G6.17 NCBI
Target Description C03G6.17 /REP_DB=WormBase Gene ID /WP=CE07891 /TR=O01460 /GB=AAB52316.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072487 NCBI Caenorhabditis elegans C03G6.17 (C03G6.17) mRNA, complete cds. 11/11 None
SNAP00000031561 ENSEMBL cdna:SNAP chromosome:CEL140:V:7382424:7383643:-1 11/11 None
C03G6.17 ENSEMBL cdna:known chromosome:CEL140:V:7382424:7383643:-1 gene:C03G6.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031570 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7382424-7383644(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03G6.17
Entrez Gene 182179 Entrez gene
SwissProt O01460 EMBL-EBI
WormBase CE35218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52316 Hypothetical protein C03G6.17 [Caenorhabditis elegans] ref|NP_504888.2| C03G6.17 [Caenorhabditis elegans] 1.0E-173
blast AAK73896 Hypothetical protein T24A6.20 [Caenorhabditis elegans] ref|NP_503996.2| T24A6.20 [Caenorhabditis elegans] 1.0E-135
blast CAE58208 Hypothetical protein CBG01303 [Caenorhabditis briggsae] 1.0E-132
Sequence
Target Sequence 
>C. ELEGANS:185999_AT
aaatgataacgctactctcacgggagccgtgaaaatgtcggccaaatatgcaacagaaca
tggatttgacaaatatccagagcactggcatttgttcagcagtttgaaaatggaagacgt
cgtaattcctggagaagtttctaaaaagttttcgaccaagcattggtcggaagtcgacta
cgatgctttgaccgcatacgaccgtacaatttgtattcgagatcgaaagaaaatcatgac
ggcctggttcaacttgtcggatacgttcacaagagtagtccttgacgacactggtaaaat
cgtgggctatggaacaattcgaattgtatcccaaaacaagttgagctcagcacccttcta
cgcagattgtctagaagccgctgtggttcttctggcagaccttctcaataatattccaaa
ctggcagaaactactgggaaaattctcaaaaagcaccgacctgatatctacagctccatt
cgttcgaagtcaattcacaaaacatctgattcctactccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGATAACGCTACTCTCACGGGA 109 121 327 Antisense
AAGTCGACTACGATGCTTTGACCGC 549 155 497 Antisense
AAATCATGACGGCCTGGTTCAACTT 278 117 557 Antisense
GGTTCAACTTGTCGGATACGTTCAC 299 507 572 Antisense
AGAGTAGTCCTTGACGACACTGGTA 297 69 598 Antisense
AAACAAGTTGAGCTCAGCACCCTTC 473 129 660 Antisense
TAGAAGCCGCTGTGGTTCTTCTGGC 184 651 698 Antisense
TTCTTCTGGCAGACCTTCTCAATAA 691 689 713 Antisense
AGCACCGACCTGATATCTACAGCTC 252 77 778 Antisense
CTACAGCTCCATTCGTTCGAAGTCA 389 227 794 Antisense
CAAAACATCTGATTCCTACTCCGGA 252 191 824 Antisense
Sequence Source Affymetrix Proprietary Database