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[185998_s_at]

Description Y71A12B.2 /REP_DB=WormBase Gene ID /WP=CE24583 /TR=Q9NEP5 /GB=CAB81987.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 11.9
(-3)
A 		18.2
(-2.8)
A 		43.7
(-1.9)
A 		193.4
(3)
P 		182
B 20.7
(-2.6)
A 		16.4
(-3)
A 		36.1
(-1.2)
A 		81.6
(3)
A 		65
C 17.9
(-2.6)
A 		30.1
(-2.2)
A 		4.2
(-3)
A 		199.5
(3)
P 		195
avr 16.8
(-3) 		21.6
(-2.8) 		28
(-2.5) 		158.2
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 11.6
(-3)
A 		10.8
(-3)
A 		67.1
(0.1)
A 		26.8
(-2.1)
A 		59.6
(-0.3)
A 		120.9
(3)
A 		110
B 49.8
(-1)
A 		29.7
(-3)
A 		29.2
(-3)
A 		53.9
(-0.6)
A 		33.2
(-2.6)
A 		91.1
(3)
A 		62
C 55.4
(1.1)
A 		71.8
(2.4)
A 		63.9
(1.7)
A 		5.5
(-3)
A 		13.1
(-2.4)
A 		79.4
(3)
A 		74
avr 38.9
(-2.1) 		37.4
(-2.2) 		53.4
(-0.8) 		28.7
(-3) 		35.3
(-2.4) 		97.1
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 4.3
(-2.9)
A 		4
(-3)
A 		11.4
(-1.2)
A 		28.3
(3)
P 		24
B 6.6
(-1.9)
A 		4.1
(-3)
A 		8.4
(-1.1)
A 		17.4
(3)
A 		13
C 5.9
(-2.2)
A 		8.6
(-1.7)
A 		1.5
(-3)
A 		33.6
(3)
P 		32
avr 5.6
(-3) 		5.6
(-3) 		7.1
(-2.6) 		26.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3.8
(-2.6)
A 		14.6
(-0.3)
A 		6.8
(-2)
A 		18
(0.5)
A 		29.4
(3)
A 		27
B 17.3
(-0.7)
A 		9.9
(-2.4)
A 		7.1
(-3)
A 		14.3
(-1.4)
A 		13.5
(-1.6)
A 		34
(3)
A 		27
C 20.5
(1.6)
A 		21.9
(1.9)
A 		16.3
(0.6)
A 		1.1
(-3)
A 		4.2
(-2.3)
A 		26.6
(3)
A 		26
avr 13.3
(-1.4) 		11.9
(-1.8) 		12.7
(-1.6) 		7.4
(-3) 		11.9
(-1.8) 		30
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185998_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1641
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.2 NCBI
Target Description Y71A12B.2 /REP_DB=WormBase Gene ID /WP=CE24583 /TR=Q9NEP5 /GB=CAB81987.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061026(11), NM_061027(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061026 NCBI Caenorhabditis elegans Y71A12B.2 (Y71A12B.2) mRNA, complete cds. 11/11 None
NM_061027 NCBI Caenorhabditis elegans Y71A12B.3 (Y71A12B.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038400 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13898460:13899576:-1 11/11 None
GENEFINDER00000038395 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13901251:13907448:1 11/11 None
Y71A12B.2 ENSEMBL cdna:known chromosome:CEL140:I:13898460:13899576:-1 gene:Y71A12B.2 11/11 None
Y71A12B.3 ENSEMBL cdna:known chromosome:CEL140:I:13901251:13902367:1 gene:Y71A12B.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038357 7/11 Cross Hyb Matching Probes None
SNAP00000038358 3/11 Cross Hyb Matching Probes None
SNAP00000038359 3/11 Cross Hyb Matching Probes None
SNAP00000038360 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13901181-13902298(+) 100.0 100.0
chrI:13898390-13899507(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y71A12B.2
Y71A12B.3
Entrez Gene 173258 Entrez gene
173259 Entrez gene
SwissProt Q9NEP5 EMBL-EBI
WormBase CE24583 Wormbase
CE24583 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14419 Hypothetical protein Y71A12B.3 [Caenorhabditis elegans] emb|CAB81987.1| Hypothetical protein Y71A12B.2 [Caenorhabditis elegans] ref|NP_493428.1| Y71A12B.3 [Caenorhabditis elegans] ref|NP_493427.1| Y71A12B.2 [Caenorhabditis elegans] 1.0E-156
blast CAC14419 Hypothetical protein Y71A12B.3 [Caenorhabditis elegans] emb|CAB81987.1| Hypothetical protein Y71A12B.2 [Caenorhabditis elegans] ref|NP_493428.1| Y71A12B.3 [Caenorhabditis elegans] ref|NP_493427.1| Y71A12B.2 [Caenorhabditis elegans] 1.0E-149
blast CAB05146 Hypothetical protein C35D6.3 [Caenorhabditis elegans] ref|NP_502948.1| C35D6.3 [Caenorhabditis elegans] 6.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038395 1 308-327
Sequence
Target Sequence 
>C. ELEGANS:185998_S_AT
ataccaaaccaacttcacactgagccttcccaaagcggctacattcgagtcaagaagcta
tgagtatttccgaacgaacctgatcaggagaaattgcgaaacctgcaaatcaagaacaat
aatcagtcaaagacatgtgaacagcgagacactattccttttcgtcagaatcgagcacaa
cttgtgcagtttcaaagatttcactgccaataagaagatcaatatttccaacacgatatt
ttttcaactctctaatatgaacttccacctccccctctccaccttcctcaaccgccacgc
accgggatgggagacccgcgaccggaatgaagtcaacgagatcttcgcccgattgggccg
agtcgagattctgaccctcaacggaacggtcgatcaaggaatccttaggctccaccagca
ggatgccaacttgatgttcgggccaccccgtcggcgcactacagtggccgcttggtacag
acaacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACCAAACCAACTTCACACTGAGC 14 21 240 Antisense
GCCTTCCCAAAGCGGCTACATTCGA 369 265 263 Antisense
AGCGAGACACTATTCCTTTTCGTCA 105 83 382 Antisense
AACTCTCTAATATGAACTTCCACCT 192 141 485 Antisense
GCCACGCACCGGGATGGGAGACCCG 130 279 533 Antisense
GGAGACCCGCGACCGGAATGAAGTC 224 511 549 Antisense
TCTTCGCCCGATTGGGCCGAGTCGA 614 615 581 Antisense
AGATTCTGACCCTCAACGGAACGGT 458 65 605 Antisense
ATCAAGGAATCCTTAGGCTCCACCA 242 25 632 Antisense
TGCCAACTTGATGTTCGGGCCACCC 500 583 663 Antisense
GTGGCCGCTTGGTACAGACAACGCC 422 491 703 Antisense
Sequence Source Affymetrix Proprietary Database