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[185996_at]

Description H42K12.2 /REP_DB=WormBase Gene ID /WP=CE27387 /TR=O17348 /GB=AAK71372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 19.7
(-1.5)
A 		10.8
(-3)
A 		24.7
(-0.7)
A 		47.5
(3)
A 		37
B 10.8
(-3)
A 		31.3
(0.3)
A 		48.1
(3)
A 		42.3
(2.1)
M 		37
C 5.7
(-3)
A 		8.9
(-2.6)
A 		35
(0.3)
A 		59.5
(3)
A 		54
avr 12.1
(-3) 		17
(-2.2) 		35.9
(0.8) 		49.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.9
(-3)
A 		20.1
(-0.2)
A 		14.1
(-1.2)
A 		24.1
(0.5)
A 		24.5
(0.5)
A 		39.6
(3)
A 		37
B 40
(3)
A 		5.1
(-2.7)
A 		7.8
(-2.3)
A 		33.3
(1.9)
A 		6.2
(-2.6)
A 		3.5
(-3)
A 		37
C 5.9
(-2.3)
A 		42.1
(3)
A 		33.7
(1.8)
A 		31.6
(1.5)
A 		3.7
(-2.6)
A 		1
(-3)
A 		41
avr 16.3
(-1.4) 		22.4
(0.6) 		18.5
(-0.7) 		29.7
(3) 		11.5
(-3) 		14.7
(-1.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.2
(3)
A 		2.3
(-3)
A 		6.5
(2.1)
A 		7
(2.8)
A 		5
B 3.5
(-3)
A 		7.7
(0.3)
A 		11.1
(3)
A 		9
(1.3)
M 		8
C 1.9
(-3)
A 		2.6
(-2.6)
A 		12.2
(3)
A 		10
(1.7)
A 		10
avr 4.2
(-3) 		4.2
(-3) 		9.9
(3) 		8.7
(1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.5
(-3)
A 		7.2
(1.4)
A 		3.1
(-1.3)
A 		6.1
(0.7)
A 		7.4
(1.5)
A 		9.6
(3)
A 		9
B 13.9
(3)
A 		1.7
(-2.8)
A 		1.9
(-2.7)
A 		8.8
(0.6)
A 		2.5
(-2.4)
A 		1.3
(-3)
A 		13
C 2.2
(-2.1)
A 		12.9
(3)
A 		8.6
(1)
A 		6.4
(-0.1)
A 		1.2
(-2.6)
A 		0.3
(-3)
A 		13
avr 5.5
(0) 		7.3
(3) 		4.5
(-1.7) 		7.1
(2.7) 		3.7
(-3) 		3.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18562
Sequence Type Exemplar sequence
Representative Public ID H42K12.2 NCBI
Target Description H42K12.2 /REP_DB=WormBase Gene ID /WP=CE27387 /TR=O17348 /GB=AAK71372.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075840(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075840 NCBI Caenorhabditis elegans H42K12.2 (H42K12.2) mRNA, complete cds. 9/11 None
H42K12.2 ENSEMBL cdna:known chromosome:CEL140:X:1318861:1320162:1 gene:H42K12.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1318860-1322416(+) 96.69 100.0
Public Domain and Genome References
Gene Title
Ensembl H42K12.2
Entrez Gene 186813 Entrez gene
SwissProt O17348 EMBL-EBI
WormBase CE27387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71372 Hypothetical protein H42K12.2 [Caenorhabditis elegans] ref|NP_508241.1| H42K12.2 [Caenorhabditis elegans] 4.0E-97
blast T32445 hypothetical protein H42K12.2 - Caenorhabditis elegans 4.0E-97
Sequence
Target Sequence 
>C. ELEGANS:185996_AT
cacacaatgtttgtttgtctccggagaggcggtggacgctgacgaagggaggcctccctg
aaagcgataacaaccgtacttgttgcggctgcgtctcttcggcggccagcggcccctcgt
cttcgctcatactctgcttcccggggggtcgacgctgcaacacacacgcgcgcaccgagg
cactgcgcggaacggccgagacgcagaaacgcacacagacttgcctttcgtctaacactt
atcaaacgctaggcaattgtctgtgttggttttaccgtcgatccatctcgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACAATGTTTGTTTGTCTCCGGA 10 195 383 Antisense
TGTCTCCGGAGAGGCGGTGGACGCT 104 557 398 Antisense
GGTGGACGCTGACGAAGGGAGGCCT 237 499 413 Antisense
AGGCCTCCCTGAAAGCGATAACAAC 361 49 432 Antisense
TAACAACCGTACTTGTTGCGGCTGC 420 639 450 Antisense
TGCGCGGAACGGCCGAGACGCAGAA 695 583 566 Antisense
AGAAACGCACACAGACTTGCCTTTC 263 73 587 Antisense
TTGCCTTTCGTCTAACACTTATCAA 326 701 603 Antisense
AACGCTAGGCAATTGTCTGTGTTGG 77 145 627 Antisense
GTCTGTGTTGGTTTTACCGTCGATC 89 469 641 Antisense
TTTACCGTCGATCCATCTCGATGGA 217 673 653 Antisense
Sequence Source Affymetrix Proprietary Database