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[185995_at] 7TM chemoreceptor, srw family

Description T24A6.14 /REP_DB=WormBase Gene ID /WP=CE14150 /TR=O61945 /GB=AAC17801.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 08      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 22.8
(-2.3)
A 		22.4
(-2.4)
A 		39.5
(3)
A 		20.5
(-3)
A 		19
B 6
(-3)
A 		8.8
(-1.9)
A 		11
(-1)
A 		21.3
(3)
A 		15
C 3.9
(-3)
A 		17.5
(-2.1)
A 		3.4
(-3)
A 		93.7
(3)
A 		90
avr 10.9
(-3) 		16.2
(-2.1) 		18
(-1.8) 		45.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 8.4
(-2.6)
A 		6.4
(-2.9)
A 		41.5
(3)
A 		6.1
(-3)
A 		36.2
(2.1)
A 		24.2
(0.1)
A 		35
B 8.6
(-1.8)
A 		7
(-2.2)
A 		10.1
(-1.5)
A 		30.8
(3)
A 		25.8
(1.9)
A 		3.2
(-3)
A 		28
C 7.1
(-3)
A 		9.6
(-2.5)
A 		13.3
(-1.6)
A 		8.1
(-2.8)
A 		34.6
(3)
A 		22.3
(0.3)
A 		28
avr 8
(-2.9) 		7.7
(-3) 		21.6
(0.4) 		15
(-1.2) 		32.2
(3) 		16.6
(-0.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.3
(1.4)
A 		4.9
(-1.4)
A 		10.3
(3)
A 		3
(-3)
A 		7
B 1.9
(-3)
A 		2.2
(-2.3)
A 		2.6
(-1.4)
A 		4.5
(3)
A 		3
C 1.3
(-3)
A 		5
(-1.4)
A 		1.2
(-3)
A 		15.8
(3)
A 		15
avr 3.8
(-3) 		4
(-2.7) 		4.7
(-1.7) 		7.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		2.3
(-2.5)
A 		9
(1.8)
A 		1.5
(-3)
A 		10.9
(3)
A 		5.9
(-0.2)
A 		9
B 3
(-1.8)
A 		2.3
(-2.3)
A 		2.5
(-2.2)
A 		8.2
(1.5)
A 		10.5
(3)
A 		1.2
(-3)
A 		9
C 2.6
(-2.4)
A 		2.9
(-2.2)
A 		3.4
(-1.9)
A 		1.6
(-3)
A 		11.2
(3)
A 		7.5
(0.7)
A 		10
avr 2.4
(-3) 		2.5
(-2.9) 		5
(-1.2) 		3.8
(-2) 		10.9
(3) 		4.9
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15260
Sequence Type Exemplar sequence
Representative Public ID T24A6.14 NCBI
Target Description T24A6.14 /REP_DB=WormBase Gene ID /WP=CE14150 /TR=O61945 /GB=AAC17801.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071592 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-130) (srw-130) mRNA, complete cds. 11/11 None
GENEFINDER00000027443 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3545503:3548724:-1 10/11 None
T24A6.14 ENSEMBL cdna:known chromosome:CEL140:V:3546795:3548724:-1 gene:T24A6.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027426 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3546794-3548724(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-130
Ensembl T24A6.14
Entrez Gene 188831 Entrez gene
SwissProt O61945 EMBL-EBI
WormBase CE14150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17801 Serpentine receptor, class w protein 130 [Caenorhabditis elegans] ref|NP_503993.1| Serpentine Receptor, class W family member (srw-130) [Caenorhabditis elegans] 0.0
blast AAC17800 Serpentine receptor, class bc (class b-like) protein 68 [Caenorhabditis elegans] ref|NP_503992.1| Serpentine Receptor, class BC (class B-like) family member (srbc-68) [Caenorhabditis elegans] 1.0E-127
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 2.0E-75
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 1.0E-73
blast AAN73865 Serpentine receptor, class w protein 138 [Caenorhabditis elegans] ref|NP_503806.2| Serpentine Receptor, class W family member (srw-138) [Caenorhabditis elegans] 2.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503993.1 6 39-61,71-90,162-184,227-249,274-296,311-333
T24A6.14 6 39-61,71-90,162-184,227-249,274-296,311-333
GENEFINDER00000027443 14 39-61,71-90,162-184,227-249,271-293,308-330,337-356,376-398,419-441,446-468,489-511,544-566,586-603,613-635
Sequence
Target Sequence 
>C. ELEGANS:185995_AT
ttcggctataaaattgcttcccagaaaaattattcaccatgctccaaagacgataagcta
gaatatgccattcttctatcaaagttgtactccaaaaatgacgggtttctgataaaacta
tattccacatcaaatgcaatgatttctcatatcattccttcgattctctttcctatagtc
acattttttcttgtaaacgtcctacgaaaagctaaaaaatctcggaaactggtatccaag
accgatagtaatacgaagtctacaaaaatcataatctatacagcgattatttttctaatt
gttgagcttccacttggaatcaatctggcgatcatttggtttttcaataattccgttgga
atcaagctgattcttgatcaatttgaagctcttttttatatgctacttaccgcaaacaca
atttcccatttctttgtttgtttcgtcttgtcttcacaatacagggcaacactgatagat
gtagtgtcgtgcgggataagtttccaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGGCTATAAAATTGCTTCCCAGA 672 693 556 Antisense
ATTATTCACCATGCTCCAAAGACGA 176 13 584 Antisense
TTCTCATATCATTCCTTCGATTCTC 121 691 699 Antisense
TTCGATTCTCTTTCCTATAGTCACA 361 695 714 Antisense
TCACATTTTTTCTTGTAAACGTCCT 125 629 734 Antisense
TCTAATTGTTGAGCTTCCACTTGGA 520 607 849 Antisense
ATCTGGCGATCATTTGGTTTTTCAA 558 33 878 Antisense
ACCGCAAACACAATTTCCCATTTCT 668 89 964 Antisense
TCCCATTTCTTTGTTTGTTTCGTCT 29 599 979 Antisense
TTGTTTGTTTCGTCTTGTCTTCACA 314 707 989 Antisense
GTGTCGTGCGGGATAAGTTTCCAGA 414 487 1039 Antisense
Sequence Source Affymetrix Proprietary Database