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[185994_at] 7TM chemoreceptor, srt family

Description C50H11.2 /REP_DB=WormBase Gene ID /WP=CE08918 /TR=O16480 /GB=AAG24003.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 12      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 26.7
(-0.5)
A 		24.4
(-0.8)
A 		3.3
(-3)
A 		59.8
(3)
P 		57
B 12.7
(-1.4)
A 		1.6
(-3)
A 		1.3
(-3)
A 		44.1
(3)
P 		43
C 11.6
(-2.1)
A 		12.5
(-2)
A 		2.7
(-3)
A 		62.2
(3)
P 		60
avr 17
(-1.3) 		12.8
(-1.8) 		2.4
(-3) 		55.4
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 10.5
(0.9)
A 		0.8
(-3)
A 		15.6
(3)
A 		1.3
(-2.8)
A 		3.4
(-1.9)
A 		4.4
(-1.5)
A 		15
B 29.8
(1.6)
A 		3
(-3)
A 		15
(-1)
A 		38.2
(3)
A 		14.9
(-1)
A 		17.1
(-0.6)
A 		35
C 1.9
(-2.8)
A 		26.2
(3)
A 		3.1
(-2.5)
A 		16.2
(0.6)
A 		11.3
(-0.5)
A 		1
(-3)
A 		25
avr 14.1
(0.6) 		10
(-1.6) 		11.2
(-1) 		18.6
(3) 		9.9
(-1.7) 		7.5
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.7
(3)
A 		5.3
(0)
A 		0.9
(-3)
A 		8.8
(2.4)
P 		9
B 4.1
(-0.5)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		9.4
(3)
P 		9
C 3.8
(-1.2)
A 		3.6
(-1.3)
A 		0.9
(-3)
A 		10.5
(3)
P 		10
avr 5.9
(0.5) 		3.1
(-1.4) 		0.7
(-3) 		9.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(0.1)
A 		0.3
(-3)
A 		3.4
(3)
A 		0.3
(-3)
A 		1
(-1.6)
A 		1.1
(-1.5)
A 		3
B 10.4
(3)
A 		1
(-3)
A 		3.6
(-1.3)
A 		10.1
(2.8)
A 		6
(0.2)
A 		6.4
(0.4)
A 		9
C 0.7
(-2.7)
A 		8
(3)
A 		0.8
(-2.6)
A 		3.3
(-0.7)
A 		3.7
(-0.4)
A 		0.3
(-3)
A 		8
avr 4.3
(2.1) 		3.1
(-1.5) 		2.6
(-3) 		4.6
(3) 		3.6
(0) 		2.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14797
Sequence Type Exemplar sequence
Representative Public ID C50H11.2 NCBI
Target Description C50H11.2 /REP_DB=WormBase Gene ID /WP=CE08918 /TR=O16480 /GB=AAG24003.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071443 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-8) (srt-8) mRNA, complete cds. 11/11 None
GENEFINDER00000043574 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3086399:3087813:1 11/11 None
C50H11.2 ENSEMBL cdna:known chromosome:CEL140:V:3086387:3087813:1 gene:C50H11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043568 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3086386-3087813(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-8
Ensembl C50H11.2
Entrez Gene 183692 Entrez gene
SwissProt O16480 EMBL-EBI
WormBase CE08918 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503844 Serpentine Receptor, class T family member (srt-8) [Caenorhabditis elegans] gb|AAG24003.1| Serpentine receptor, class t protein 8 [Caenorhabditis elegans] 0.0
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-144
blast NP_503842 Serpentine Receptor, class T family member (srt-7) [Caenorhabditis elegans] gb|AAG23992.1| Serpentine receptor, class t protein 7 [Caenorhabditis elegans] 1.0E-142
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 1.0E-137
blast NP_504897 Serpentine Receptor, class T family member (srt-6) [Caenorhabditis elegans] gb|AAK72298.1| Serpentine receptor, class t protein 6 [Caenorhabditis elegans] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503844.1 7 36-58,71-93,108-130,151-173,204-226,239-261,271-293
C50H11.2 7 36-58,71-93,108-130,151-173,204-226,239-261,271-293
GENEFINDER00000043574 7 32-54,67-89,104-126,147-169,200-222,235-257,267-289
Sequence
Target Sequence 
>C. ELEGANS:185994_AT
tgcgttcagcctgtgctattttcgattgaatatagctcatggttttttgatccattgatt
ggaaatgatccagacatttacctatgtaacccagatacagtgaacaactgggttcttctc
actaccattaccgccctttatttttatctctcataccacttacttttcaaatttggatat
tctacgtcaatatggctatacaaaactagacgtcagataatattccaagcattgatgctt
tgcgttttccatggaatcgtctgtggcatttatgaattcatgaagtatgtatatttctca
catacgctggttattttgagccaacttttgtggggatggagcagtggctgcatgtgcata
gcatatctggcatttaatagaacaattcggaactctgtcttgaaaatatcaataccgaaa
agtatccgagaacgttatggattgcacgttggttttgaagagcacttggcacaaactgaa
gcagctcataatcccgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTTCAGCCTGTGCTATTTTCGA 581 583 514 Antisense
TGAACAACTGGGTTCTTCTCACTAC 530 573 614 Antisense
GCCCTTTATTTTTATCTCTCATACC 6 287 646 Antisense
TCTCTCATACCACTTACTTTTCAAA 207 613 660 Antisense
AAGCATTGATGCTTTGCGTTTTCCA 268 151 740 Antisense
TTTTCCATGGAATCGTCTGTGGCAT 381 673 758 Antisense
TATATTTCTCACATACGCTGGTTAT 636 661 803 Antisense
ACGCTGGTTATTTTGAGCCAACTTT 185 91 817 Antisense
GCTGCATGTGCATAGCATATCTGGC 548 295 860 Antisense
GAACAATTCGGAACTCTGTCTTGAA 415 353 893 Antisense
AACTGAAGCAGCTCATAATCCCGCG 60 141 987 Antisense
Sequence Source Affymetrix Proprietary Database