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[185992_s_at]

Description K07C11.9 /REP_DB=WormBase Gene ID /WP=CE07351 /TR=Q21270 /GB=AAA96179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 428.9
(-0.1)
P 		539
(2.6)
P 		557.2
(3)
P 		307.3
(-3)
P 		250
B 420.5
(-0.3)
P 		558.4
(3)
P 		505
(1.7)
P 		305.3
(-3)
P 		253
C 434
(0)
P 		600.3
(3)
P 		589.7
(2.8)
P 		264.7
(-3)
P 		336
avr 427.8
(-0) 		565.9
(3) 		550.6
(2.7) 		292.4
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 375
(-3)
P 		500.7
(-0.6)
P 		564.2
(0.5)
P 		695.7
(3)
P 		475.3
(-1.1)
P 		373.7
(-3)
P 		322
B 536.7
(0.9)
P 		477
(-0.6)
P 		619.6
(3)
P 		564.4
(1.6)
P 		564.1
(1.6)
P 		378.8
(-3)
P 		241
C 478.4
(-3)
P 		509.7
(-1.8)
P 		629.4
(3)
P 		575.9
(0.9)
P 		521.1
(-1.3)
P 		495.3
(-2.3)
P 		151
avr 463.4
(-1.5) 		495.8
(-0.6) 		604.4
(2.8) 		612
(3) 		520.2
(0.2) 		415.9
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 156.2
(3)
P 		117
(0.9)
P 		145.7
(2.4)
P 		45
(-3)
P 		111
B 134.1
(2.7)
P 		137.9
(3)
P 		117
(1.3)
P 		65
(-3)
P 		73
C 143.7
(0.7)
P 		172.6
(1.8)
P 		205.5
(3)
P 		44.6
(-3)
P 		161
avr 144.7
(2.3) 		142.5
(2.2) 		156.1
(3) 		51.5
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 69.1
(-3)
P 		178.1
(3)
P 		122.9
(-0)
P 		176.5
(2.9)
P 		143.4
(1.1)
P 		91
(-1.8)
P 		109
B 186.8
(0.1)
P 		158.8
(-1.8)
P 		150.5
(-2.4)
P 		149.5
(-2.4)
P 		229.2
(3)
P 		141.3
(-3)
P 		88
C 177.3
(3)
P 		155.5
(0.9)
P 		160.2
(1.3)
P 		115.8
(-3)
P 		168.6
(2.2)
P 		165.8
(1.9)
P 		62
avr 144.4
(-1.5) 		164.1
(0.9) 		144.5
(-1.5) 		147.3
(-1.2) 		180.4
(3) 		132.7
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185992_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11478
Sequence Type Exemplar sequence
Representative Public ID K07C11.9 NCBI
Target Description K07C11.9 /REP_DB=WormBase Gene ID /WP=CE07351 /TR=Q21270 /GB=AAA96179.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072717 NCBI Caenorhabditis elegans K07C11.9 (K07C11.9) mRNA, complete cds. 11/11 None
SNAP00000021028 ENSEMBL cdna:SNAP chromosome:CEL140:V:8221053:8223795:-1 11/11 None
GENEFINDER00000021033 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8221053:8223795:-1 11/11 None
K07C11.9 ENSEMBL cdna:known chromosome:CEL140:V:8220870:8223898:-1 gene:K07C11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8221053-8223796(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07C11.9
Entrez Gene 179201 Entrez gene
SwissProt Q21270 EMBL-EBI
WormBase CE07351 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96179 Hypothetical protein K07C11.9 [Caenorhabditis elegans] ref|NP_505118.1| K07C11.9 [Caenorhabditis elegans] sp|Q21270|COG6_CAEEL Putative conserved oligomeric Golgi complex component 0.0
blast CAE56939 Hypothetical protein CBG24784 [Caenorhabditis briggsae] 0.0
blast CAE66102 Hypothetical protein CBG11322 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010490 EMBL-EBI Conserved oligomeric complex COG6 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185992_S_AT
ggatctacgaatatgtcttggaaccacttattcagacggttcaactcagtgcaactcgtc
tgaaatctgatattgaagtttctgtgttcacaattaactgcttaacagtcattagaagtg
caatctcggaaatatcggcgttcaagaagaagattgaaatgattgacgcgatgatcgaag
gaaattcagacgtattggtgtcagttcaagtatcggaaatgctcgaaaaatctggaattt
tagaattatatcagaagttcaatgcagtaaatcctgctgaaaagaagccgttgtccactc
tacctggcttggaatctaccacagttggggaagctattgtaatgttcacgcagtaccttc
ataatcatgcatcctctgaccacacttacgatatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTACGAATATGTCTTGGAACC 678 511 1325 Antisense
TCTTGGAACCACTTATTCAGACGGT 629 617 1340 Antisense
GACGGTTCAACTCAGTGCAACTCGT 354 377 1359 Antisense
GTGCAACTCGTCTGAAATCTGATAT 324 481 1373 Antisense
CTGTGTTCACAATTAACTGCTTAAC 583 237 1406 Antisense
ATCTCGGAAATATCGGCGTTCAAGA 260 31 1447 Antisense
TGAAAAGAAGCCGTTGTCCACTCTA 239 573 1602 Antisense
CACTCTACCTGGCTTGGAATCTACC 169 195 1620 Antisense
GGAATCTACCACAGTTGGGGAAGCT 663 525 1635 Antisense
TGTTCACGCAGTACCTTCATAATCA 51 563 1667 Antisense
CTCTGACCACACTTACGATATCGAC 602 229 1698 Antisense
Sequence Source Affymetrix Proprietary Database