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[185991_s_at]

Description F20E11.11 /REP_DB=WormBase Gene ID /WP=CE18620 /TR=Q9XV77 /GB=CAB04148.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 27      6grp_cgc > 22      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 3.1
(-2.5)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		25.7
(3)
A 		25
B 8.2
(-1.5)
A 		27
(3)
A 		1.7
(-3)
A 		1.9
(-3)
A 		25
C 1.7
(-2.6)
A 		1.5
(-2.8)
A 		1.3
(-3)
A 		7.7
(3)
A 		6
avr 4.3
(-1.4) 		9.9
(1.9) 		1.5
(-3) 		11.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.6
(3)
A 		1.8
(-3)
A 		2.1
(-2.7)
A 		3.1
(-1.9)
A 		3.9
(-1.1)
A 		3.1
(-1.9)
A 		7
B 24.5
(3)
A 		19.7
(1.8)
A 		7.3
(-1.4)
A 		2.2
(-2.7)
A 		2.7
(-2.6)
A 		1
(-3)
A 		24
C 1
(-2.1)
A 		3.2
(1.3)
A 		2.7
(0.5)
A 		4.3
(3)
A 		4
(2.5)
A 		0.4
(-3)
A 		4
avr 11.4
(3) 		8.2
(1.1) 		4
(-1.5) 		3.2
(-2) 		3.5
(-1.8) 		1.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.1
(-1.6)
A 		0.3
(-3)
A 		0.4
(-2.8)
A 		3.8
(3)
A 		4
B 2.6
(-0.9)
A 		6.7
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		6
C 0.6
(-1.7)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1.3
(3)
A 		1
avr 1.4
(-0.1) 		2.5
(3) 		0.4
(-3) 		1.8
(1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.6
(3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		0.8
(-1.4)
A 		1.2
(0.8)
A 		0.8
(-1.4)
A 		1
B 8.5
(3)
A 		6.6
(1.6)
A 		1.8
(-2)
A 		0.6
(-2.9)
A 		1.1
(-2.5)
A 		0.4
(-3)
A 		8
C 0.4
(-1.5)
A 		1
(1.5)
A 		0.7
(0)
A 		0.9
(1)
A 		1.3
(3)
A 		0.1
(-3)
A 		1
avr 3.5
(3) 		2.7
(1.5) 		1
(-1.8) 		0.8
(-2.2) 		1.2
(-1.5) 		0.4
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185991_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12763
Sequence Type Exemplar sequence
Representative Public ID F20E11.11 NCBI
Target Description F20E11.11 /REP_DB=WormBase Gene ID /WP=CE18620 /TR=Q9XV77 /GB=CAB04148.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074947 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-174) (srh-174) mRNA, complete cds. 11/11 A 
SNAP00000026448 ENSEMBL cdna:SNAP chromosome:CEL140:V:17181335:17182580:1 11/11 None
GENEFINDER00000026458 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17181335:17186202:1 11/11 None
GENEFINDER00000027637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17441688:17444351:1 11/11 None
F40D4.1 ENSEMBL cdna:known chromosome:CEL140:V:17181335:17182580:1 gene:F40D4.1 11/11 A 
F20E11.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17441688:17442949:1 gene:F20E11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17441687-17442949(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-174
Ensembl F40D4.1
F20E11.11
Entrez Gene 185519 Entrez gene
SwissProt Q9XV29 EMBL-EBI
WormBase CE19835 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 0.0
blast CAB04149 Hypothetical protein F20E11.12 [Caenorhabditis elegans] ref|NP_507412.1| Serpentine Receptor, class H family member (srh-154) [Caenorhabditis elegans] 0.0
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 0.0
blast CAB04365 Hypothetical protein F40D4.1 [Caenorhabditis elegans] ref|NP_507348.1| Serpentine Receptor, class H family member (srh-174) [Caenorhabditis elegans] 1.0E-179
blast CAB63199 Hypothetical protein F40D4.2 [Caenorhabditis elegans] ref|NP_507349.1| Serpentine Receptor, class H family member (srh-155) [Caenorhabditis elegans] 1.0E-173
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.3E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.1E-43
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-52
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507348.1 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
F40D4.1 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
SNAP00000026448 7 15-37,57-79,94-116,137-159,194-216,237-259,274-296
GENEFINDER00000026458 10 15-37,57-79,94-116,137-159,194-216,237-259,342-361,382-404,462-484,491-513
GENEFINDER00000027637 13 15-37,50-72,87-106,119-141,180-202,215-245,300-322,404-426,446-468,489-511,548-570,591-613,628-647
Sequence
Target Sequence 
>C. ELEGANS:185991_S_AT
ttttgtcctattaattgataacccagtctacagcatttgcgtaagcctcttggtaattaa
agtgtgcccacaaattggtatagtcgttttgttcatattcccttatattgttcaaacgaa
atcacattctcgagccacacttcgtttacttcttcacttttttatcgcgatgtgtatcca
gctgtctattccatttttggtcatcttcttgccggctgcttttatagtgtacgcaattca
atatgactattataatcaaggtatgaatattaggccttccacgaaggcgctattctcgcc
cgcccgtaccacaccaacgctcttctcagttgcacgcggctatagtagcgcgagggcccg
cgtagcgtcggccgccttcatagaagcagcaaacaacttggcgatggcaacaatggcatt
ccatggggtatgtactacactgaccatgatcatcgtgcatacaccgtatcgtaacgctac
tttgagcattttacatctgaaatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGTCCTATTAATTGATAACCCA 189 677 510 Antisense
AAATTGGTATAGTCGTTTTGTTCAT 265 113 581 Antisense
AAGCAGCAAACAACTTGGCGATGGC 517 149 893 Antisense
TTGGCGATGGCAACAATGGCATTCC 525 705 907 Antisense
AATGGCATTCCATGGGGTATGTACT 452 161 921 Antisense
GGTATGTACTACACTGACCATGATC 66 505 936 Antisense
TACACTGACCATGATCATCGTGCAT 281 643 945 Antisense
GATCATCGTGCATACACCGTATCGT 627 419 957 Antisense
ACACCGTATCGTAACGCTACTTTGA 422 109 970 Antisense
GCTACTTTGAGCATTTTACATCTGA 330 303 985 Antisense
TGAGCATTTTACATCTGAAATCGGA 75 567 992 Antisense
Sequence Source Affymetrix Proprietary Database