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[185990_at]

Description F20E11.11 /REP_DB=WormBase Gene ID /WP=CE18620 /TR=Q9XV77 /GB=CAB04148.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 19      6grp_cgc > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 5.7
(-3)
A 		36
(3)
A 		8.8
(-2.4)
A 		14.3
(-1.3)
A 		30
B 25.1
(-1)
A 		14.8
(-2.8)
A 		13.6
(-3)
A 		48
(3)
A 		34
C 26.9
(-0.6)
A 		20
(-2.8)
A 		19.4
(-3)
A 		37.9
(3)
A 		19
avr 19.2
(-1.4) 		23.6
(-0) 		13.9
(-3) 		33.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.7
(-1.6)
A 		7.9
(-1.8)
A 		22.7
(3)
A 		4.3
(-3)
A 		15.5
(0.7)
A 		19.4
(1.9)
A 		18
B 21
(0.9)
A 		30.2
(3)
A 		28
(2.5)
A 		4.1
(-3)
A 		18.2
(0.2)
A 		16.3
(-0.2)
A 		26
C 24.3
(3)
A 		24.1
(2.9)
A 		7
(-1.9)
A 		13.9
(0.1)
A 		3.1
(-3)
A 		23.4
(2.7)
A 		21
avr 18
(1.8) 		20.7
(3) 		19.2
(2.3) 		7.4
(-3) 		12.3
(-0.8) 		19.7
(2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.1
(-3)
A 		7.8
(3)
A 		2.3
(-2.8)
A 		2.1
(-3)
A 		6
B 8
(1.1)
A 		3.7
(-2.6)
A 		3.2
(-3)
A 		10.2
(3)
A 		7
C 8.9
(3)
A 		5.7
(-3)
A 		6.8
(-0.9)
A 		6.4
(-1.7)
A 		3
avr 6.3
(3) 		5.7
(1.4) 		4.1
(-3) 		6.2
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.6
(-2.2)
A 		2.8
(-0.4)
A 		5
(3)
A 		1.1
(-3)
A 		4.7
(2.5)
A 		4.7
(2.5)
A 		4
B 7.3
(1.1)
A 		10.1
(3)
A 		6.8
(0.8)
A 		1.1
(-3)
A 		7.4
(1.2)
A 		6.1
(0.3)
A 		9
C 9
(3)
A 		7.4
(1.8)
A 		1.8
(-2.4)
A 		2.8
(-1.7)
A 		1
(-3)
A 		7.8
(2.1)
A 		8
avr 6
(2.1) 		6.8
(3) 		4.5
(0.3) 		1.7
(-3) 		4.4
(0.2) 		6.2
(2.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12763
Sequence Type Exemplar sequence
Representative Public ID F20E11.11 NCBI
Target Description F20E11.11 /REP_DB=WormBase Gene ID /WP=CE18620 /TR=Q9XV77 /GB=CAB04148.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027637 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17441688:17444351:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F20E11.11 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17441687-17442949(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04149 Hypothetical protein F20E11.12 [Caenorhabditis elegans] ref|NP_507412.1| Serpentine Receptor, class H family member (srh-154) [Caenorhabditis elegans] 0.0
blast T21162 hypothetical protein F20E11.11 - Caenorhabditis elegans 0.0
blast CAB63199 Hypothetical protein F40D4.2 [Caenorhabditis elegans] ref|NP_507349.1| Serpentine Receptor, class H family member (srh-155) [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-52
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.9E-87
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027637 13 15-37,50-72,87-106,119-141,180-202,215-245,300-322,404-426,446-468,489-511,548-570,591-613,628-647
Sequence
Target Sequence 
>C. ELEGANS:185990_AT
aaattccgagtatccctatcgacgtgccttctcgctcaggatattttgtcctattaattg
ataacccagtctacagcatttgcgtaagcctcttggtaattaaagtgtgcccacaaattg
gtatagtcgttttgttcatattcccttatattgttcaaacgaaatcacattctcgagcca
cacttcgtttacttcttcacttttttatcgcgatgtgtatccagctgtctattccatttt
tggtcatcttcttgccggctgcttttatagtgtacgcaattcaatatgactattataatc
aaggtatgaatattaggccttccacgaaggcgctattctcgcccgcccgtaccacaccaa
cgctcttctcagttgcacgcggctatagtagcgcgagggcccgcgtagcgtcggccgcct
tcatagaagcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCCGAGTATCCCTATCGACGT 122 71 467 Antisense
TTGATAACCCAGTCTACAGCATTTG 627 679 524 Antisense
ACAGCATTTGCGTAAGCCTCTTGGT 241 109 539 Antisense
AGTCGTTTTGTTCATATTCCCTTAT 199 61 591 Antisense
TTATCGCGATGTGTATCCAGCTGTC 268 681 671 Antisense
CGGCTGCTTTTATAGTGTACGCAAT 28 241 722 Antisense
GGTATGAATATTAGGCCTTCCACGA 229 503 769 Antisense
CTTCCACGAAGGCGCTATTCTCGCC 498 217 785 Antisense
TTCTCAGTTGCACGCGGCTATAGTA 90 693 832 Antisense
TATAGTAGCGCGAGGGCCCGCGTAG 171 653 850 Antisense
TCGGCCGCCTTCATAGAAGCAGCAA 581 607 877 Antisense
Sequence Source Affymetrix Proprietary Database