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[185989_at]

Description F33D11.6 /REP_DB=WormBase Gene ID /WP=CE09896 /TR=O44775 /GB=AAB96699.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 34.6
(-3)
A 		40.2
(-2.5)
A 		78
(0.6)
M 		107.5
(3)
A 		73
B 26.5
(-2.3)
A 		36.1
(-0.5)
A 		22.6
(-3)
A 		54.8
(3)
A 		32
C 53.6
(3)
A 		3.4
(-3)
A 		30.5
(0.2)
A 		39.2
(1.3)
A 		50
avr 38.2
(-1.3) 		26.6
(-3) 		43.7
(-0.5) 		67.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 37.4
(3)
A 		13.1
(-1.9)
A 		36.4
(2.8)
A 		22.9
(0.1)
A 		7.5
(-3)
A 		7.5
(-3)
A 		30
B 23.2
(-0.9)
A 		40.6
(1.8)
A 		9.8
(-3)
A 		48.5
(3)
A 		31.2
(0.3)
A 		16.6
(-1.9)
A 		39
C 27.7
(1.2)
A 		37.2
(3)
A 		36.4
(2.8)
A 		4.6
(-2.9)
A 		37.4
(3)
A 		4.3
(-3)
A 		33
avr 29.4
(2.7) 		30.3
(3) 		27.5
(2.2) 		25.3
(1.6) 		25.4
(1.6) 		9.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.6
(-1)
A 		8.7
(-3)
A 		20.4
(3)
M 		15.7
(0.6)
A 		12
B 8.4
(-0)
A 		8.9
(0.4)
A 		5.2
(-3)
A 		11.7
(3)
A 		7
C 17.7
(3)
A 		1
(-3)
A 		10.6
(0.4)
A 		6.6
(-1)
A 		17
avr 12.9
(3) 		6.2
(-3) 		12.1
(2.3) 		11.3
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.9
(2)
A 		4.7
(-0.1)
A 		7.9
(3)
A 		5.8
(0.9)
A 		2.3
(-2.5)
A 		1.8
(-3)
A 		6
B 8.1
(0.1)
A 		13.5
(3)
A 		2.4
(-3)
A 		12.8
(2.6)
A 		12.7
(2.6)
A 		6.2
(-0.9)
A 		11
C 10.3
(2)
A 		11.4
(2.6)
A 		9.3
(1.5)
A 		0.9
(-3)
A 		12.1
(3)
A 		1.4
(-2.7)
A 		11
avr 8.4
(1.7) 		9.9
(3) 		6.5
(-0) 		6.5
(-0) 		9
(2.2) 		3.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.727
Sequence Type Exemplar sequence
Representative Public ID F33D11.6 NCBI
Target Description F33D11.6 /REP_DB=WormBase Gene ID /WP=CE09896 /TR=O44775 /GB=AAB96699.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059294 NCBI Caenorhabditis elegans F33D11.6 (F33D11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000028968 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5852972:5854980:-1 10/11 None
SNAP00000028953 ENSEMBL cdna:SNAP chromosome:CEL140:I:5853939:5854602:-1 11/11 None
F33D11.6 ENSEMBL cdna:known chromosome:CEL140:I:5853939:5854602:-1 gene:F33D11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5853938-5854602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D11.6
Entrez Gene 185228 Entrez gene
WormBase CE39015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96699 Hypothetical protein F33D11.6 [Caenorhabditis elegans] 0.0
blast CAE67336 Hypothetical protein CBG12798 [Caenorhabditis briggsae] 1.0E-111
blast NP_491695 F33D11.6 [Caenorhabditis elegans] 1.0E-103
blast AAB96699 Hypothetical protein F33D11.6 [Caenorhabditis elegans] 1.0E-101
blast NP_491695 F33D11.6 [Caenorhabditis elegans] 4.0E-99
blast CAE67336 Hypothetical protein CBG12798 [Caenorhabditis briggsae] 7.0E-58
Sequence
Target Sequence 
>C. ELEGANS:185989_AT
gttccaggactcaaaactaggctactacatctactcaacattgaaccttaaaagaggctg
tacatcaattccaaatgatatcccagaacatccaactcaaccggaatccacctacttgtc
aaaacttcaaacaactttgaatacaaaaatcttcaacggacagcgacatccacaatccac
gtatcagtcatttgtgaatgagtttctgattaatacaacaagagttcagttctgtgaaag
aaatggagaaacgttgggaaaatcggaatttcgtgactatttattcaagcgatacgcaga
tgtgaaggcatatacagattttgaattcaccacaactccattttcggactatcaaacaga
tgcagtgatttctgtgattgtgacatggacaaatggaaatattatgaaggataaatatcg
gtttagagttgaagaggccagggaaagaggagatgatcaaggatggaaggactggtggtc
tacttatgttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCAGGACTCAAAACTAGGCTAC 341 437 15 Antisense
GGCTACTACATCTACTCAACATTGA 36 539 34 Antisense
AAGAGGCTGTACATCAATTCCAAAT 304 153 66 Antisense
GATATCCCAGAACATCCAACTCAAC 141 425 91 Antisense
ATCCACCTACTTGTCAAAACTTCAA 300 35 120 Antisense
ATCTTCAACGGACAGCGACATCCAC 238 29 163 Antisense
ACATCCACAATCCACGTATCAGTCA 28 107 180 Antisense
GTGACTATTTATTCAAGCGATACGC 619 481 287 Antisense
AGATTTTGAATTCACCACAACTCCA 494 63 330 Antisense
ACCACAACTCCATTTTCGGACTATC 277 83 343 Antisense
GGACTGGTGGTCTACTTATGTTTTT 331 523 483 Antisense
Sequence Source Affymetrix Proprietary Database