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[185988_at]

Description F01G12.3 /REP_DB=WormBase Gene ID /WP=CE04333 /TR=Q19096 /GB=AAA96213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 17      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 235.5
(-2.2)
P 		249.1
(-1.6)
P 		218.4
(-3)
P 		347.6
(3)
P 		129
B 154.4
(-3)
P 		176.4
(-1.5)
P 		241.8
(3)
P 		238.5
(2.8)
P 		87
C 250.9
(-3)
P 		293
(1)
P 		261.2
(-2)
P 		313.8
(3)
P 		63
avr 213.6
(-3) 		239.5
(-1.2) 		240.5
(-1.1) 		300
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 175.8
(-0.2)
P 		255.4
(3)
P 		201.2
(0.8)
P 		212.9
(1.3)
P 		105.4
(-3)
P 		166.6
(-0.6)
P 		150
B 203.2
(3)
P 		195.3
(1.3)
P 		190.9
(0.4)
P 		195.1
(1.3)
P 		175.3
(-3)
P 		175.6
(-2.9)
P 		28
C 287.6
(3)
P 		199.7
(-2.1)
P 		227.1
(-0.5)
P 		227.5
(-0.5)
P 		183.9
(-3)
P 		230.3
(-0.3)
P 		104
avr 222.2
(3) 		216.8
(2.5) 		206.4
(1.6) 		211.8
(2.1) 		154.9
(-3) 		190.8
(0.2) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 85.7
(3)
P 		54.1
(-2.4)
P 		57.1
(-1.9)
P 		50.9
(-3)
P 		35
B 49.3
(-0.2)
P 		43.6
(-3)
P 		56
(3)
P 		50.8
(0.5)
P 		12
C 83.1
(1.8)
P 		84.2
(1.9)
P 		91
(3)
P 		52.9
(-3)
P 		38
avr 72.7
(3) 		60.6
(-0.4) 		68
(1.7) 		51.5
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 32.4
(-2.9)
P 		90.8
(3)
P 		43.8
(-1.8)
P 		54
(-0.7)
P 		31.8
(-3)
P 		40.6
(-2.1)
P 		59
B 70.7
(2.9)
P 		65
(1.5)
P 		46.3
(-3)
P 		51.7
(-1.7)
P 		71.2
(3)
P 		65.5
(1.6)
P 		25
C 106.6
(3)
P 		60.9
(-1.5)
P 		57.8
(-1.8)
P 		45.7
(-3)
P 		59.5
(-1.6)
P 		77.1
(0.1)
P 		61
avr 69.9
(2.4) 		72.2
(3) 		49.3
(-3) 		50.5
(-2.7) 		54.2
(-1.7) 		61.1
(0.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17712
Sequence Type Exemplar sequence
Representative Public ID F01G12.3 NCBI
Target Description F01G12.3 /REP_DB=WormBase Gene ID /WP=CE04333 /TR=Q19096 /GB=AAA96213.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171809 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-7) (sur-7) mRNA, complete cds. 11/11 None
SNAP00000041957 ENSEMBL cdna:SNAP chromosome:CEL140:X:16376521:16379631:1 11/11 None
GENEFINDER00000041966 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16376521:16379631:1 11/11 None
F01G12.2b ENSEMBL cdna:known chromosome:CEL140:X:16376513:16379961:1 gene:F01G12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181707 2 1 NM_171809 185988_at (11)
NM_171810 185979_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16376520-16377703(+) 100.0 100.0
Public Domain and Genome References
Ensembl F01G12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96213 Suppressor of activated let-60 ras protein 7, isoform b [Caenorhabditis elegans] ref|NP_741942.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 0.0
blast AAA96214 Suppressor of activated let-60 ras protein 7, isoform a [Caenorhabditis elegans] ref|NP_741943.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 1.0E-156
blast AAA96214 Suppressor of activated let-60 ras protein 7, isoform a [Caenorhabditis elegans] ref|NP_741943.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 1.0E-116
blast CAE69975 Hypothetical protein CBG16373 [Caenorhabditis briggsae] 8.0E-79
blast CAE69975 Hypothetical protein CBG16373 [Caenorhabditis briggsae] 2.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741942.1 6 39-61,65-87,100-122,152-174,179-201,216-238
F01G12.2b 6 39-61,65-87,100-122,152-174,179-201,216-238
SNAP00000041957 6 39-61,65-87,100-122,177-199,204-226,241-263
GENEFINDER00000041966 6 39-61,65-87,100-122,152-174,179-201,216-238
Sequence
Target Sequence 
>C. ELEGANS:185988_AT
atcagctgcacaaagagcccattttgaggaatccccattaatgcaaaatgagcaagtgat
cagaacacaaggtgctttacacaggcttgtggtcatcacagtgctctttctcgccctcac
acagtatggatatggaatcgcctttcattcatcactaatgagcattcaatttgctgcatc
tgcattggcgttcatcagttcgattgaagtactttggcatagtaaaagtaaaaacgatat
tgcgaatcgacacagtgtttttcttctttatcgaaccgctggaacggttttcttcatcgc
atgcctttttctcaacttgacccattgcctcgaagacgttagtgatctcaattcagcgac
ccactcggaagttggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAGCTGCACAAAGAGCCCATTTT 434 27 51 Antisense
AGCCCATTTTGAGGAATCCCCATTA 375 77 66 Antisense
GGCTTGTGGTCATCACAGTGCTCTT 452 537 134 Antisense
CTCGCCCTCACACAGTATGGATATG 564 233 160 Antisense
ATGGAATCGCCTTTCATTCATCACT 291 53 182 Antisense
TGCTGCATCTGCATTGGCGTTCATC 65 583 222 Antisense
GACACAGTGTTTTTCTTCTTTATCG 572 365 299 Antisense
ACCGCTGGAACGGTTTTCTTCATCG 414 87 325 Antisense
GACCCATTGCCTCGAAGACGTTAGT 492 381 369 Antisense
GTTAGTGATCTCAATTCAGCGACCC 313 447 388 Antisense
TCAGCGACCCACTCGGAAGTTGGGA 167 601 403 Antisense
Sequence Source Affymetrix Proprietary Database