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[185987_at]

Description M02A10.1 /REP_DB=WormBase Gene ID /WP=CE07386 /TR=Q21459 /GB=AAC48057.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 43.8
(3)
A 		4.7
(-3)
A 		4.5
(-3)
A 		9.6
(-2.2)
A 		39
B 64.9
(3)
A 		22.5
(-2)
A 		14.5
(-3)
A 		50.1
(1.2)
P 		50
C 11.1
(-2.5)
A 		8.4
(-2.9)
A 		7.4
(-3)
A 		49.2
(3)
A 		42
avr 39.9
(3) 		11.9
(-2.4) 		8.8
(-3) 		36.3
(2.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.3
(-2.3)
A 		3.5
(-3)
A 		4.2
(-2.8)
A 		27.5
(3)
A 		17.5
(0.5)
A 		5.1
(-2.6)
A 		24
B 46.4
(3)
A 		27.6
(-1.1)
A 		19.1
(-3)
A 		42.6
(2.2)
A 		36.5
(0.8)
A 		40.8
(1.8)
A 		27
C 9.7
(-2.2)
A 		27.4
(0.9)
A 		5.1
(-3)
A 		10.8
(-2)
A 		5.4
(-2.9)
A 		39.8
(3)
A 		35
avr 20.8
(0.5) 		19.5
(0.1) 		9.5
(-3) 		27
(2.5) 		19.8
(0.2) 		28.6
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 16
(3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		1.4
(-2.8)
A 		15
B 20.7
(3)
A 		5.5
(-2.2)
A 		3.3
(-3)
A 		10.7
(-0.4)
P 		17
C 3.7
(-1.7)
A 		2.4
(-3)
A 		2.6
(-2.8)
A 		8.3
(3)
A 		6
avr 13.5
(3) 		3
(-2.7) 		2.4
(-3) 		6.8
(-0.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		1.2
(-2.7)
A 		0.9
(-3)
A 		7
(3)
A 		5.3
(1.3)
A 		1.2
(-2.7)
A 		6
B 16.1
(3)
A 		9.2
(-0.6)
A 		4.6
(-3)
A 		11.3
(0.5)
A 		14.8
(2.3)
A 		15.2
(2.5)
A 		12
C 3.6
(-1.9)
A 		8.4
(0.6)
A 		1.3
(-3)
A 		2.2
(-2.6)
A 		1.8
(-2.8)
A 		13.3
(3)
A 		12
avr 7
(0.7) 		6.3
(0.2) 		2.3
(-3) 		6.8
(0.6) 		7.3
(0.9) 		9.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18382
Sequence Type Exemplar sequence
Representative Public ID M02A10.1 NCBI
Target Description M02A10.1 /REP_DB=WormBase Gene ID /WP=CE07386 /TR=Q21459 /GB=AAC48057.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075743 NCBI Caenorhabditis elegans M02A10.1 (M02A10.1) mRNA, complete cds. 11/11 None
SNAP00000002288 ENSEMBL cdna:SNAP chromosome:CEL140:X:706248:707539:1 11/11 None
GENEFINDER00000002294 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:706816:707539:1 11/11 None
M02A10.1 ENSEMBL cdna:known chromosome:CEL140:X:706816:707539:1 gene:M02A10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:706815-707539(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02A10.1
Entrez Gene 187392 Entrez gene
SwissProt Q21459 EMBL-EBI
WormBase CE07386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48057 Hypothetical protein M02A10.1 [Caenorhabditis elegans] ref|NP_508144.1| M02A10.1 [Caenorhabditis elegans] 4.0E-41
blast AAC48057 Hypothetical protein M02A10.1 [Caenorhabditis elegans] ref|NP_508144.1| M02A10.1 [Caenorhabditis elegans] 5.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508144.1 1 98-120
M02A10.1 1 98-120
SNAP00000002288 1 119-141
GENEFINDER00000002294 1 98-120
Sequence
Target Sequence 
>C. ELEGANS:185987_AT
tggagcttccccaaatcgaatatttgaaccctttaagtctagatcagattgcaattcgca
aaagctctttttccactcaatccacaagcactcaagcacacagtgaaacggaacttcacc
cttccgaagagcctcaaaagaaaaggcggactgttacattcggtaacattgacatcaccg
agcttaactatcaggcaacaaaaattccaccggagcagaggaggcagtggaagcggcaag
caattcggagaagaattgagaaaagagagttctaccgtcgcataaaaatgggattcctca
aaggatgcatcatattccttttattcactttatgctccctgatagttcttctagcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCTTCCCCAAATCGAATATTT 79 547 14 Antisense
TTCGCAAAAGCTCTTTTTCCACTCA 443 697 68 Antisense
CAATCCACAAGCACTCAAGCACACA 125 183 91 Antisense
TTCACCCTTCCGAAGAGCCTCAAAA 240 687 128 Antisense
GAAAAGGCGGACTGTTACATTCGGT 570 325 153 Antisense
GGTAACATTGACATCACCGAGCTTA 182 505 175 Antisense
CACCGAGCTTAACTATCAGGCAACA 320 201 189 Antisense
AAAGAGAGTTCTACCGTCGCATAAA 380 121 275 Antisense
GATGCATCATATTCCTTTTATTCAC 380 413 317 Antisense
TTTTATTCACTTTATGCTCCCTGAT 50 677 332 Antisense
GCTCCCTGATAGTTCTTCTAGCGAC 400 299 347 Antisense
Sequence Source Affymetrix Proprietary Database