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[185986_at]

Description F56A11.4 /REP_DB=WormBase Gene ID /WP=CE28459 /TR=O44515 /GB=AAB92076.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 56.7
(1.9)
P 		38.1
(-0.4)
A 		16.4
(-3)
A 		65.8
(3)
P 		49
B 51.2
(3)
A 		6.3
(-3)
A 		39.3
(1.4)
A 		22.8
(-0.8)
A 		45
C 53.1
(2.1)
P 		2.7
(-3)
A 		19.9
(-1.3)
A 		61.7
(3)
A 		59
avr 53.7
(3) 		15.7
(-3) 		25.2
(-1.5) 		50.1
(2.4) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 41.4
(1.3)
A 		23.4
(-0.6)
A 		28.9
(-0.1)
A 		1.6
(-3)
A 		57.2
(3)
A 		40.9
(1.2)
A 		56
B 43.5
(3)
A 		38.6
(2.2)
A 		31.4
(1)
A 		10.4
(-2.5)
A 		7.6
(-3)
A 		12.6
(-2.2)
A 		36
C 26.4
(3)
A 		5.1
(-2.8)
A 		4.3
(-3)
A 		4.5
(-2.9)
A 		21.4
(1.6)
A 		12.9
(-0.7)
A 		22
avr 37.1
(3) 		22.4
(0.2) 		21.5
(0) 		5.5
(-3) 		28.7
(1.4) 		22.1
(0.2) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.6
(3)
P 		8.3
(-1.5)
A 		4.3
(-3)
A 		9.6
(-1)
P 		16
B 16.3
(3)
A 		1.6
(-3)
A 		9.1
(0.1)
A 		4.9
(-1.7)
A 		15
C 17.6
(3)
P 		0.8
(-3)
A 		7
(-0.8)
A 		10.4
(0.4)
A 		17
avr 18.2
(3) 		3.6
(-3) 		6.8
(-1.7) 		8.3
(-1.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.6
(-0.4)
A 		8.3
(-0.2)
A 		6.3
(-0.9)
A 		0.4
(-3)
A 		17.3
(3)
A 		10
(0.4)
A 		17
B 15.1
(3)
A 		12.9
(1.9)
A 		7.6
(-0.7)
A 		2.8
(-3)
A 		3.1
(-2.9)
A 		4.7
(-2.1)
A 		12
C 9.8
(3)
A 		1.5
(-2.6)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		6.9
(1)
A 		4.3
(-0.7)
A 		9
avr 10.8
(3) 		7.6
(1) 		5
(-0.7) 		1.4
(-3) 		9.1
(1.9) 		6.3
(0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10988
Sequence Type Exemplar sequence
Representative Public ID F56A11.4 NCBI
Target Description F56A11.4 /REP_DB=WormBase Gene ID /WP=CE28459 /TR=O44515 /GB=AAB92076.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067545(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067545 NCBI Caenorhabditis elegans F56A11.4 (F56A11.4) mRNA, complete cds. 10/11 A 
GENEFINDER00000007073 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:548302:553202:1 11/11 None
F56A11.4 ENSEMBL cdna:known chromosome:CEL140:IV:548152:553231:1 gene:F56A11.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007066 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:548151-553202(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56A11.4
Entrez Gene 176881 Entrez gene
SwissProt O44515 EMBL-EBI
WormBase CE28459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92076 Hypothetical protein F56A11.4 [Caenorhabditis elegans] ref|NP_499946.1| F56A11.4 [Caenorhabditis elegans] 0.0
blast AAB92076 Hypothetical protein F56A11.4 [Caenorhabditis elegans] ref|NP_499946.1| F56A11.4 [Caenorhabditis elegans] 1.0E-176
blast CAE58469 Hypothetical protein CBG01609 [Caenorhabditis briggsae] 1.0E-157
blast CAE58469 Hypothetical protein CBG01609 [Caenorhabditis briggsae] 1.0E-155
blast CAA87434 Hypothetical protein ZK1307.7 [Caenorhabditis elegans] ref|NP_496074.2| ZK1307.7 [Caenorhabditis elegans] 6.0E-28
blast CAA87434 Hypothetical protein ZK1307.7 [Caenorhabditis elegans] ref|NP_496074.2| ZK1307.7 [Caenorhabditis elegans] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499946.1 6 70-92,105-127,147-169,190-209,254-276,363-385
F56A11.4 6 70-92,105-127,147-169,190-209,254-276,363-385
GENEFINDER00000007073 6 20-42,55-77,97-119,140-159,191-213,300-322
Sequence
Target Sequence 
>C. ELEGANS:185986_AT
ccattcaaacggatttcagtcggttttggttgagaatcggtgtcaaagtattgcaacaac
ttctgagcttcttcctgacaacctgtccttccaaccacttctcgggacctcactcacctc
gtcaactatcaacagtttttcttcgtttaatgatcaaatgcctagcctgctccgtcgcaa
ttcagaggcatgtgcagcccgtcgtcggaagcgcgacgcgacacgcacgttggcagcact
catcacaatctacctgttgacaaacacattaaacctactgataacaattatggagtttat
caatccagatgtgttgggcagtttaggtgaaggatggacgtacaaatacctggccgactt
gtcttctgtgctcactatctcatcaactgccttccgactacctgtctatttccattgtaa
tggagacattcgcgcacagatacgacactttgcaaaggcttgttttattgagcagaatga
gaaaaagaaattggtatgcattgggttcagaatgtccattag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCAAACGGATTTCAGTCGGTT 303 269 870 Antisense
CAGTCGGTTTTGGTTGAGAATCGGT 520 205 886 Antisense
GTATTGCAACAACTTCTGAGCTTCT 243 453 917 Antisense
ATCAACAGTTTTTCTTCGTTTAATG 567 25 997 Antisense
AATGATCAAATGCCTAGCCTGCTCC 229 165 1018 Antisense
CTGCTCCGTCGCAATTCAGAGGCAT 273 237 1036 Antisense
ATTCAGAGGCATGTGCAGCCCGTCG 446 3 1049 Antisense
TCGTCGGAAGCGCGACGCGACACGC 310 605 1071 Antisense
GCACTCATCACAATCTACCTGTTGA 140 317 1105 Antisense
GACAAACACATTAAACCTACTGATA 595 365 1128 Antisense
GCATTGGGTTCAGAATGTCCATTAG 234 305 1367 Antisense
Sequence Source Affymetrix Proprietary Database