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[185985_s_at]

Description F09E10.6 /REP_DB=WormBase Gene ID /WP=CE27938 /TR=Q19249 /GB=AAB52485.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 24.8
(-1.1)
A 		45.6
(3)
A 		15.5
(-3)
A 		15.4
(-3)
A 		30
B 4.2
(-3)
A 		64.9
(3)
A 		51
(1.6)
A 		23.4
(-1.1)
A 		61
C 24.2
(-3)
A 		50.5
(-0.2)
A 		51.9
(-0.1)
A 		81.4
(3)
A 		57
avr 17.7
(-3) 		53.7
(3) 		39.5
(0.6) 		40.1
(0.7) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 48.3
(1.5)
A 		60.5
(3)
A 		47.5
(1.4)
A 		29.6
(-0.8)
A 		45.5
(1.2)
A 		11.3
(-3)
A 		49
B 63.2
(-0.4)
A 		99.1
(3)
P 		36.2
(-3)
A 		74.4
(0.6)
A 		51.8
(-1.5)
A 		53.6
(-1.3)
A 		63
C 29.2
(-3)
A 		90.6
(3)
A 		35.8
(-2.4)
A 		55.7
(-0.4)
A 		37.3
(-2.2)
A 		67.8
(0.8)
A 		61
avr 46.9
(-2) 		83.4
(3) 		39.8
(-3) 		53.2
(-1.2) 		44.9
(-2.3) 		44.2
(-2.4) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9
(2.3)
A 		9.9
(3)
A 		4
(-1.7)
A 		2.3
(-3)
A 		8
B 1.3
(-3)
A 		16
(3)
A 		11.8
(1.3)
A 		5
(-1.5)
A 		15
C 8
(-3)
A 		14.5
(0.9)
A 		18.1
(3)
A 		13.7
(0.4)
A 		10
avr 6.1
(-3) 		13.5
(3) 		11.3
(1.2) 		7
(-2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.9
(-1)
A 		21.5
(3)
A 		10.3
(-0.6)
A 		7.5
(-1.5)
A 		13.7
(0.5)
A 		2.7
(-3)
A 		19
B 22
(0.3)
A 		33
(3)
P 		8.8
(-3)
A 		19.7
(-0.3)
A 		21
(0)
A 		20
(-0.2)
A 		24
C 10.8
(-2.4)
A 		27.6
(3)
A 		9.1
(-3)
A 		11.2
(-2.3)
A 		12.1
(-2)
A 		22.7
(1.4)
A 		19
avr 13.9
(-1.5) 		27.4
(3) 		9.4
(-3) 		12.8
(-1.9) 		15.6
(-0.9) 		15.1
(-1.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18363
Sequence Type Exemplar sequence
Representative Public ID F09E10.6 NCBI
Target Description F09E10.6 /REP_DB=WormBase Gene ID /WP=CE27938 /TR=Q19249 /GB=AAB52485.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075883(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075883 NCBI Caenorhabditis elegans F09E10.6 (F09E10.6) mRNA, complete cds. 10/11 None
F09E10.6 ENSEMBL cdna:known chromosome:CEL140:X:1495069:1497661:-1 gene:F09E10.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026373 7/11 Cross Hyb Matching Probes None
SNAP00000026363 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1495185-1497616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E10.6
Entrez Gene 180487 Entrez gene
SwissProt Q19249 EMBL-EBI
WormBase CE27938 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52485 Hypothetical protein F09E10.6 [Caenorhabditis elegans] ref|NP_508284.1| F09E10.6 [Caenorhabditis elegans] 4.0E-59
blast CAE70014 Hypothetical protein CBG16428 [Caenorhabditis briggsae] 1.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508284.1 1 105-119
F09E10.6 1 105-119
Sequence
Target Sequence 
>C. ELEGANS:185985_S_AT
cacagcttccttgttcggagcaatctacacgatccgatgttatagtgaacccccaccaac
tttccacctgctactcccccaccaaaaactcccctcgaatggtcacgttggacggagaca
ctacgaaggagctcagtacagctgcgattttggagagtgccggcgcgagggatgcaacaa
acgcgacagcggtggcaccatttgctgctgctccaccgacgagtgcaatgacggaaataa
ctttaaaaacaagcttattctcgtttttcttacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGCTTCCTTGTTCGGAGCAATC 427 195 33 Antisense
GGAGCAATCTACACGATCCGATGTT 544 519 49 Antisense
CCGATGTTATAGTGAACCCCCACCA 39 1 66 Antisense
TCCCCTCGAATGGTCACGTTGGACG 706 591 122 Antisense
TGGACGGAGACACTACGAAGGAGCT 4 547 141 Antisense
GAAGGAGCTCAGTACAGCTGCGATT 112 335 157 Antisense
GCTGCGATTTTGGAGAGTGCCGGCG 628 297 173 Antisense
GGGATGCAACAAACGCGACAGCGGT 104 495 201 Antisense
GACAGCGGTGGCACCATTTGCTGCT 572 367 217 Antisense
CTGCTCCACCGACGAGTGCAATGAC 289 237 240 Antisense
CAAGCTTATTCTCGTTTTTCTTACG 559 185 282 Antisense
Sequence Source Affymetrix Proprietary Database