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[185983_at]

Description Y95D11A.1 /REP_DB=WormBase Gene ID /WP=CE23166 /TR=Q9U1P7 /GB=CAB60435.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 62      6grp_total > 44      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 452.3
(-2.7)
P 		523.2
(-0.5)
P 		442.9
(-3)
P 		632.2
(3)
P 		189
B 419.2
(-2.5)
P 		534.7
(-0.5)
P 		393.2
(-3)
P 		739.4
(3)
P 		346
C 520.9
(1.6)
P 		433.1
(-3)
P 		546.4
(3)
P 		514.4
(1.3)
P 		113
avr 464.1
(-2.9) 		497
(-1.7) 		460.8
(-3) 		628.7
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 448.5
(-0.8)
P 		504
(0.4)
P 		628.2
(3)
P 		507.4
(0.5)
P 		343.8
(-3)
P 		389.3
(-2)
P 		284
B 508.5
(-2.3)
P 		645.5
(-0.1)
P 		840.6
(3)
P 		465.3
(-3)
P 		475.1
(-2.8)
P 		515.2
(-2.2)
P 		375
C 499.7
(-0.1)
P 		601.8
(2.2)
P 		462.6
(-1)
P 		388.7
(-2.7)
P 		375.8
(-3)
P 		635.4
(3)
P 		260
avr 485.6
(-0.9) 		583.8
(1.5) 		643.8
(3) 		453.8
(-1.6) 		398.2
(-3) 		513.3
(-0.2) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 164.7
(3)
P 		113.6
(-1.2)
P 		115.8
(-1.1)
P 		92.5
(-3)
P 		72
B 133.7
(0.8)
P 		132.1
(0.7)
P 		91.1
(-3)
P 		157.6
(3)
P 		67
C 172.4
(2)
P 		124.5
(-0.8)
P 		190.4
(3)
P 		86.7
(-3)
P 		104
avr 156.9
(3) 		123.4
(-1.5) 		132.4
(-0.3) 		112.3
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 82.7
(-3)
P 		179.2
(3)
P 		136.8
(0.4)
P 		128.7
(-0.1)
P 		103.7
(-1.7)
P 		94.8
(-2.2)
P 		97
B 176.9
(0.5)
P 		214.9
(3)
P 		204.1
(2.3)
P 		123.3
(-3)
P 		193
(1.6)
P 		192.1
(1.5)
P 		92
C 185.2
(1.8)
P 		183.6
(1.7)
P 		117.7
(-1.2)
P 		78.2
(-3)
P 		121.6
(-1.1)
P 		212.7
(3)
P 		135
avr 148.3
(-0.2) 		192.6
(3) 		152.9
(0.1) 		110.1
(-3) 		139.4
(-0.9) 		166.5
(1.1) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.735
Sequence Type Exemplar sequence
Representative Public ID Y95D11A.1 NCBI
Target Description Y95D11A.1 /REP_DB=WormBase Gene ID /WP=CE23166 /TR=Q9U1P7 /GB=CAB60435.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060451 NCBI Caenorhabditis elegans Y95D11A.1 (Y95D11A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001098 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10952335:10953694:1 11/11 None
Y95D11A.1.2 ENSEMBL cdna:known chromosome:CEL140:I:10952333:10953795:1 gene:Y95D11A.1 11/11 None
Y95D11A.1.1 ENSEMBL cdna:known chromosome:CEL140:I:10952335:10953815:1 gene:Y95D11A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001093 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10952265-10953625(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y95D11A.1
Entrez Gene 173000 Entrez gene
SwissProt Q9U1P7 EMBL-EBI
WormBase CE23166 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60435 Hypothetical protein Y95D11A.1 [Caenorhabditis elegans] ref|NP_492852.1| Y95D11A.1 [Caenorhabditis elegans] 4.0E-65
blast CAE73040 Hypothetical protein CBG20410 [Caenorhabditis briggsae] 9.0E-47
Sequence
Target Sequence 
>C. ELEGANS:185983_AT
atgctctctgcagtcagatttccatttcttgaatcttctcttcgattctcagctgccgct
ttctcaacagtacctgattttaaagatccaatcaaagatcaagccgaggcattagtggct
cgaaaggcatcggaagcgaagaaaggaagagttcagagttggagaaaaccaatctacacg
gctccccatcaacatgtctttgaacaaactccggatttttcgtttaaagatggacgaact
attcatgttacttcgcaaaaacagctaaactacaaacttgatcagattcgactcgctaaa
aaaatggtggcgctattgaaggaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTCTGCAGTCAGATTTCCAT 422 41 13 Antisense
ATTTCCATTTCTTGAATCTTCTCTT 595 17 30 Antisense
TGAATCTTCTCTTCGATTCTCAGCT 118 577 42 Antisense
CCGCTTTCTCAACAGTACCTGATTT 457 263 68 Antisense
CAAGCCGAGGCATTAGTGGCTCGAA 223 185 112 Antisense
GTGGCTCGAAAGGCATCGGAAGCGA 162 491 127 Antisense
GAGAAAACCAATCTACACGGCTCCC 246 391 174 Antisense
GCTCCCCATCAACATGTCTTTGAAC 393 299 193 Antisense
GAACTATTCATGTTACTTCGCAAAA 705 349 248 Antisense
AACTTGATCAGATTCGACTCGCTAA 169 139 287 Antisense
ATGGTGGCGCTATTGAAGGAAACTG 210 49 316 Antisense
Sequence Source Affymetrix Proprietary Database