[Home] | [Total List]

[185982_s_at]

Description T21D12.1 /REP_DB=WormBase Gene ID /WP=CE17239 /TR=O16788 /GB=AAC48089.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      6grp_total > 86      4grp_total > 63      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 101.4
(-1.5)
P 		148.3
(3)
A 		86.1
(-3)
A 		90.1
(-2.6)
A 		62
B 73.6
(0.7)
A 		6.2
(-3)
A 		116
(3)
P 		49.4
(-0.6)
P 		110
C 105.2
(0.4)
P 		54.8
(-3)
A 		143.9
(3)
P 		86.5
(-0.9)
P 		89
avr 93.4
(0.1) 		69.8
(-3) 		115.3
(3) 		75.3
(-2.3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 121.2
(-1.7)
A 		81.5
(-3)
A 		141.8
(-1.1)
P 		183.3
(0.2)
P 		188.8
(0.4)
P 		271.9
(3)
P 		190
B 104.7
(-3)
P 		120.4
(-2.6)
M 		179.6
(-1)
P 		137.6
(-2.1)
P 		196.6
(-0.6)
P 		335
(3)
P 		230
C 118.8
(-2.8)
A 		162.7
(-1.2)
P 		112.7
(-3)
P 		181.2
(-0.5)
P 		176.5
(-0.7)
P 		279.9
(3)
P 		167
avr 114.9
(-3) 		121.5
(-2.8) 		144.7
(-2) 		167.4
(-1.3) 		187.3
(-0.6) 		295.6
(3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 36.9
(3)
P 		32.2
(1.8)
A 		22.5
(-0.6)
A 		13.2
(-3)
A 		24
B 23.5
(2.2)
A 		1.5
(-3)
A 		26.9
(3)
P 		10.5
(-0.9)
P 		25
C 34.8
(0.4)
P 		15.7
(-2.8)
A 		50.2
(3)
P 		14.6
(-3)
P 		36
avr 31.7
(2.6) 		16.5
(-1.9) 		33.2
(3) 		12.8
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 22.3
(-3)
A 		29
(-2.1)
A 		30.9
(-1.8)
P 		46.5
(0.3)
P 		57
(1.7)
P 		66.2
(3)
P 		44
B 36.4
(-3)
P 		40.1
(-2.7)
M 		43.6
(-2.5)
P 		36.4
(-3)
P 		79.9
(-0.1)
P 		124.9
(3)
P 		89
C 44
(-1.6)
A 		49.7
(-1.1)
P 		28.7
(-3)
P 		36.4
(-2.3)
P 		57.1
(-0.4)
P 		93.7
(3)
P 		65
avr 34.2
(-3) 		39.6
(-2.5) 		34.4
(-3) 		39.8
(-2.4) 		64.7
(0) 		94.9
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185982_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10515
Sequence Type Exemplar sequence
Representative Public ID T21D12.1 NCBI
Target Description T21D12.1 /REP_DB=WormBase Gene ID /WP=CE17239 /TR=O16788 /GB=AAC48089.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067486(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067486 NCBI Caenorhabditis elegans R02D3.8 (R02D3.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000019200 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:256482:257189:-1 11/11 None
R02D3.8 ENSEMBL cdna:known chromosome:CEL140:IV:255989:257189:-1 gene:R02D3.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019183 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:256481-257189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R02D3.8
Entrez Gene 176845 Entrez gene
SwissProt Q9TZZ9 EMBL-EBI
WormBase CE18102 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8156.1.S1_S_AT similar to prion protein interacting protein 1 cfa
CHICKEN:GGA.18185.1.S1_AT prion protein interacting protein gga
HG-U133A:208973_AT prion protein interacting protein hs
HG-U133A_2:208973_AT prion protein interacting protein hs
HG-U133_PLUS_2:208973_AT prion protein interacting protein hs
HU35KSUBA:RC_AA423841_F_AT prion protein interacting protein hs
HU35KSUBA:AA401850_AT prion protein interacting protein hs
HU35KSUBD:RC_T03526_AT prion protein interacting protein hs
HU35KSUBD:RC_F04143_F_AT prion protein interacting protein hs
U133_X3P:G12654484_3P_AT prion protein interacting protein hs
HG-U95AV2:39772_AT prion protein interacting protein hs
HG-U133_PLUS_2:231605_AT Prion protein interacting protein hs
HG-U133B:231605_AT Prion protein interacting protein hs
HG-U95C:53412_AT Prion protein interacting protein hs
HG-U95C:61014_AT Prion protein interacting protein hs
HG-U95E:67991_AT Prion protein interacting protein hs
HG-U95E:82993_AT Prion protein interacting protein hs
HU35KSUBA:AA180073_AT Prion protein interacting protein hs
HU35KSUBD:RC_AA347247_AT Prion protein interacting protein hs
U133_X3P:HS.147257.0.A1_3P_AT Prion protein interacting protein hs
MOE430A:1427761_AT prion protein interacting protein 1 mm
MOUSE430A_2:1427761_AT prion protein interacting protein 1 mm
MOUSE430_2:1427761_AT prion protein interacting protein 1 mm
MOUSE430A_2:1425265_A_AT prion protein interacting protein 1 mm
MOE430A:1425265_A_AT prion protein interacting protein 1 mm
MOUSE430_2:1425265_A_AT prion protein interacting protein 1 mm
MG-U74CV2:135060_F_AT prion protein interacting protein 1 mm
MG-U74BV2:164896_F_AT prion protein interacting protein 1 mm
MG-U74BV2:162681_AT prion protein interacting protein 1 mm
MG-U74CV2:168353_F_AT prion protein interacting protein 1 mm
MG-U74CV2:167362_R_AT prion protein interacting protein 1 mm
MU19KSUBC:TC36622_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
MU19KSUBC:TC36814_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
MU19KSUBC:TC36814_G_AT Prion protein interacting protein 1 (Prnpip1), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4527 exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-156
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-141
blast CAE65673 Hypothetical protein CBG10739 [Caenorhabditis briggsae] 1.0E-108
blast AAB94148 Hypothetical protein R02D3.8 [Caenorhabditis elegans] ref|NP_499887.1| R02D3.8 [Caenorhabditis elegans] 1.0E-106
blast AAB09126 Hypothetical protein M02B7.2 [Caenorhabditis elegans] ref|NP_500418.1| M02B7.2 [Caenorhabditis elegans] 1.0E-95
blast CAE65673 Hypothetical protein CBG10739 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 7.5E-43
Pfam IPR006055 EMBL-EBI Exonuclease 8.0E-30
Sequence
Target Sequence 
>C. ELEGANS:185982_S_AT
gataaacttcacgaggacaccaagattattacttgacacagtagcccattactcatcatt
cttggaaagcacaaagcttgtaaagactcgggaagtgaagaaaccacccagatatccaaa
cttttcactgaaaaaagatacgaaaaatcaaaaaatgagccagcactttgattatcttct
agtattagacttcgaagccacgtgtcaagataactggaaagggccgatgcatccagtcca
agaaatcatcgaattcccagtggtccagctctcgacggctgattggagtgaaattcgtcg
ttttcatcaatacgttaagccgacggaatgtccaaggctcacatctttctgcacatcttt
aacaggaattattcaggaaatggttgacgaaaaaccgacgcttccacaagttttatcgga
atttgatagctggctgaaagaggattctcgactggaaaagggcaaatttgcattcgtcac
ttgtggagattgggatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAACTTCACGAGGACACCAAGA 77 423 18 Antisense
TACTTGACACAGTAGCCCATTACTC 88 643 47 Antisense
GTAGCCCATTACTCATCATTCTTGG 553 457 58 Antisense
CACCCAGATATCCAAACTTTTCACT 128 201 122 Antisense
ATTAGACTTCGAAGCCACGTGTCAA 216 11 201 Antisense
TGGAAAGGGCCGATGCATCCAGTCC 434 547 232 Antisense
AATTCGTCGTTTTCATCAATACGTT 571 175 309 Antisense
CGTTAAGCCGACGGAATGTCCAAGG 376 245 330 Antisense
TGACGAAAAACCGACGCTTCCACAA 129 571 402 Antisense
GGGCAAATTTGCATTCGTCACTTGT 613 493 477 Antisense
TCGTCACTTGTGGAGATTGGGATCT 347 605 491 Antisense
Sequence Source Affymetrix Proprietary Database