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[185981_s_at]

Description Y45F10B.2 /REP_DB=WormBase Gene ID /WP=CE18401 /TR=O62467 /GB=CAA16353.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 4.7
(-2.3)
A 		4.1
(-2.4)
A 		0.9
(-3)
A 		34.8
(3)
A 		34
B 4.1
(-0.8)
A 		1.9
(-3)
A 		8
(3)
A 		3.5
(-1.4)
A 		6
C 3.3
(-3)
A 		6.7
(-2.1)
A 		16.4
(0.5)
A 		25.9
(3)
A 		23
avr 4
(-3) 		4.2
(-2.9) 		8.4
(-1.5) 		21.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 1.9
(-3)
A 		12.8
(3)
A 		3.1
(-2.3)
A 		11
(2)
A 		10.3
(1.6)
A 		4.2
(-1.7)
A 		11
B 1.3
(-3)
A 		10.9
(-1.7)
A 		11.1
(-1.6)
A 		4.1
(-2.6)
A 		38.5
(2.2)
P 		44.6
(3)
P 		43
C 0.9
(-3)
A 		30.3
(2.7)
A 		16.9
(0.1)
A 		2.1
(-2.8)
A 		31.9
(3)
M 		23.6
(1.4)
A 		31
avr 1.4
(-3) 		18
(0.9) 		10.4
(-0.9) 		5.7
(-2) 		26.9
(3) 		24.1
(2.3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-1.2)
A 		0.9
(-2.1)
A 		0.2
(-3)
A 		5.1
(3)
A 		5
B 1.3
(0.4)
A 		0.5
(-3)
A 		1.9
(3)
A 		0.7
(-2.1)
A 		1
C 1.1
(-3)
A 		1.9
(-2)
A 		5.7
(3)
A 		4.4
(1.3)
A 		5
avr 1.4
(-2.2) 		1.1
(-3) 		2.6
(0.9) 		3.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.4
(-3)
A 		4.5
(3)
A 		0.7
(-2.6)
A 		2.8
(0.5)
A 		3.1
(1)
A 		1
(-2.1)
A 		4
B 0.5
(-3)
A 		3.6
(-1.8)
A 		2.7
(-2.2)
A 		1.1
(-2.8)
A 		15.7
(2.7)
P 		16.6
(3)
P 		16
C 0.3
(-3)
A 		9.3
(2.4)
A 		4.3
(-0.6)
A 		0.4
(-2.9)
A 		10.3
(3)
M 		7.9
(1.6)
A 		10
avr 0.4
(-3) 		5.8
(0.5) 		2.6
(-1.6) 		1.4
(-2.4) 		9.7
(3) 		8.5
(2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185981_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8671
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.2 NCBI
Target Description Y45F10B.2 /REP_DB=WormBase Gene ID /WP=CE18401 /TR=O62467 /GB=CAA16353.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070222(11), NM_065393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070222 NCBI Caenorhabditis elegans Y45F10B.2 (Y45F10B.2) mRNA, complete cds. 11/11 A 
NM_065393 NCBI Caenorhabditis elegans F37A8.2 (F37A8.2) mRNA, complete cds. 11/11 A 
SNAP00000009908 ENSEMBL cdna:SNAP chromosome:CEL140:III:3929282:3931361:-1 10/11 None
GENEFINDER00000009914 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3929526:3931400:-1 11/11 None
SNAP00000007861 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13594486:13596248:1 11/11 None
GENEFINDER00000007869 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13594486:13596248:1 11/11 None
F37A8.2 ENSEMBL cdna:known chromosome:CEL140:III:3929526:3931400:-1 gene:F37A8.2 11/11 A 
Y45F10B.2 ENSEMBL cdna:known chromosome:CEL140:IV:13594486:13596248:1 gene:Y45F10B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13594491-13596254(+) 100.0 100.0
chrIII:3929525-3931400(-) 91.71 91.71
Public Domain and Genome References
Gene Title

Ensembl F37A8.2
Y45F10B.2
Entrez Gene 175511 Entrez gene
189913 Entrez gene
SwissProt Q20112 EMBL-EBI
O62467 EMBL-EBI
WormBase CE20754 Wormbase
CE18401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16353 Hypothetical protein Y45F10B.2 [Caenorhabditis elegans] ref|NP_502623.1| Y45F10B.2 [Caenorhabditis elegans] 0.0
blast CAA84663 Hypothetical protein F37A8.2 [Caenorhabditis elegans] ref|NP_497794.1| F37A8.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185981_S_AT
gaacgcggatggaacatacggatgcagttctcagcaatgctactggaagggctcatctcg
tcaagagagtaagaagaactatgaaaatgatatttgtcggaagcaaagagcaaaggcact
gggtatgaaagatcttgggattgatgtgaaaccggcttcttctgcaagctcaaatccgat
caaagaaacatccgattcttcgtctgaaactaactgctctctctcttctggaccagtttc
cttcaaccatacaatgttgaactcattgactcctgtcgccgaacattctgttgcaatcat
gatggtgcttgtggagccgctcgaggtgtacggtattgttcatagctacgtagaaatgag
cttcccactcgacacgaatcttgccaaggctcttggagtaatgttgcatcgaaagaagaa
aattctcggagactatgtggcaaatggaaaactgtattttggatttgtgaatgatgatga
aaagattggtatgcgtcgtatcaagtcgaattattatgatagcttgatggttgcggagat
tccgaaatttgatgatcgtgtcgtcctcatctttgatgtcggagattatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGCGGATGGAACATACGGATGC 399 345 633 Antisense
GGATGCAGTTCTCAGCAATGCTACT 71 515 652 Antisense
GTTCTCAGCAATGCTACTGGAAGGG 192 443 659 Antisense
CAAAGAGCAAAGGCACTGGGTATGA 193 193 736 Antisense
AGGCACTGGGTATGAAAGATCTTGG 499 37 746 Antisense
CGGCTTCTTCTGCAAGCTCAAATCC 21 243 785 Antisense
TCTGCAAGCTCAAATCCGATCAAAG 150 609 793 Antisense
ATGTTGAACTCATTGACTCCTGTCG 537 47 886 Antisense
GAAAAGATTGGTATGCGTCGTATCA 694 351 1111 Antisense
GATAGCTTGATGGTTGCGGAGATTC 408 425 1150 Antisense
CTCATCTTTGATGTCGGAGATTATG 549 229 1198 Antisense
Sequence Source Affymetrix Proprietary Database