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[185980_at]

Description Y45F10B.2 /REP_DB=WormBase Gene ID /WP=CE18401 /TR=O62467 /GB=CAA16353.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 40.9
(0.4)
A 		16.8
(-2.4)
A 		11.3
(-3)
A 		63.8
(3)
A 		53
B 6.9
(-3)
A 		38.6
(1.9)
A 		45.8
(3)
A 		11.2
(-2.3)
A 		39
C 11.9
(-2.9)
A 		34.4
(-0)
A 		11
(-3)
A 		58.3
(3)
A 		47
avr 19.9
(-3) 		29.9
(-0.6) 		22.7
(-2.3) 		44.4
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 55.1
(3)
A 		4.7
(-3)
A 		5.2
(-2.9)
A 		4.6
(-3)
A 		53.3
(2.8)
A 		12
(-2.1)
A 		51
B 46.5
(1.9)
A 		56
(3)
A 		7.5
(-2.5)
A 		52.6
(2.6)
A 		3.1
(-3)
A 		24.7
(-0.6)
A 		53
C 7
(-2.9)
A 		60.5
(3)
A 		24.1
(-1)
A 		38.2
(0.5)
A 		6.5
(-3)
A 		31.2
(-0.3)
A 		54
avr 36.2
(2.1) 		40.4
(3) 		12.3
(-3) 		31.8
(1.2) 		21
(-1.1) 		22.6
(-0.8) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.9
(3)
A 		3.7
(-2.6)
A 		2.9
(-3)
A 		9.3
(0.2)
A 		12
B 2.2
(-3)
A 		9.5
(2.2)
A 		10.6
(3)
A 		2.4
(-2.9)
A 		8
C 3.9
(-2.9)
A 		9.9
(3)
A 		3.8
(-3)
A 		9.8
(2.9)
A 		6
avr 7
(0.8) 		7.7
(3) 		5.8
(-3) 		7.2
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.2
(0.6)
A 		1.7
(-2.8)
A 		1.1
(-3)
A 		1.2
(-3)
A 		16.1
(3)
A 		2.9
(-2.3)
A 		15
B 16.2
(2.1)
A 		18.7
(3)
A 		1.8
(-2.8)
A 		13.9
(1.3)
A 		1.3
(-3)
A 		9.2
(-0.3)
A 		17
C 2.6
(-2.8)
A 		18.5
(3)
A 		6.1
(-1.5)
A 		7.7
(-1)
A 		2.1
(-3)
A 		10.4
(0)
A 		16
avr 9.7
(1) 		13
(3) 		3
(-3) 		7.6
(-0.2) 		6.5
(-0.9) 		7.5
(-0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8671
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.2 NCBI
Target Description Y45F10B.2 /REP_DB=WormBase Gene ID /WP=CE18401 /TR=O62467 /GB=CAA16353.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070222 NCBI Caenorhabditis elegans Y45F10B.2 (Y45F10B.2) mRNA, complete cds. 11/11 A 
SNAP00000007861 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13594486:13596248:1 11/11 None
GENEFINDER00000007869 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13594486:13596248:1 11/11 None
Y45F10B.2 ENSEMBL cdna:known chromosome:CEL140:IV:13594486:13596248:1 gene:Y45F10B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13594491-13596254(+) 100.0 100.0
chrIII:3929525-3931400(-) 91.71 91.71
Public Domain and Genome References
Gene Title
Ensembl Y45F10B.2
Entrez Gene 189913 Entrez gene
SwissProt O62467 EMBL-EBI
WormBase CE18401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16353 Hypothetical protein Y45F10B.2 [Caenorhabditis elegans] ref|NP_502623.1| Y45F10B.2 [Caenorhabditis elegans] 0.0
blast CAA84663 Hypothetical protein F37A8.2 [Caenorhabditis elegans] ref|NP_497794.1| F37A8.2 [Caenorhabditis elegans] 0.0
blast CAE74568 Hypothetical protein CBG22332 [Caenorhabditis briggsae] 5.0E-70
blast CAE74568 Hypothetical protein CBG22332 [Caenorhabditis briggsae] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:185980_AT
ctggaagggctcatctcgtcaagagagtaagaagaactatgaaaatgatatttgtcggaa
gcaaagagcaaaggcactgggtatgaaagatcttgggattgatgtgaaaccggcttcttc
tgcaagctcaaatccgatcaaagaaacatccgattcttcgtctgaaactaactgctctct
ctcttctggaccagtttccttcaaccatacaatgttgaactcattgactcctgtcgccga
acattctgttgcaatcatgatggtgcttgtggagccgctcgaggtgtacggtattgttca
tagctacgtagaaatgagcttcccactcgacacgaatcttgccaaggctcttggagtaat
gttgcatcgaaagaagaaaattctcggagactatgtggcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGAAGGGCTCATCTCGTCAAGAG 130 241 675 Antisense
GGGCTCATCTCGTCAAGAGAGTAAG 493 491 681 Antisense
GGATTGATGTGAAACCGGCTTCTTC 202 507 770 Antisense
CTGTCGCCGAACATTCTGTTGCAAT 49 241 905 Antisense
CGAACATTCTGTTGCAATCATGATG 397 251 912 Antisense
TGCTTGTGGAGCCGCTCGAGGTGTA 136 579 938 Antisense
GGAGCCGCTCGAGGTGTACGGTATT 452 519 945 Antisense
CCGCTCGAGGTGTACGGTATTGTTC 211 263 949 Antisense
GCCAAGGCTCTTGGAGTAATGTTGC 676 277 1015 Antisense
CTCTTGGAGTAATGTTGCATCGAAA 479 229 1022 Antisense
AATTCTCGGAGACTATGTGGCAAAT 232 177 1053 Antisense
Sequence Source Affymetrix Proprietary Database