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[185979_s_at]

Description F01G12.2 /REP_DB=WormBase Gene ID /WP=CE04332 /TR=Q19097 /GB=AAA96214.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      4grp_high_8_8 > 07      6grp_total > 20      4grp_total > 06      6grp_cgc > 65      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 381.5
(3)
M 		256.6
(-3)
P 		282.4
(-1.8)
P 		337.6
(0.9)
P 		125
B 330
(-0.2)
P 		294.5
(-3)
M 		301.4
(-2.5)
P 		369.9
(3)
P 		75
C 262.9
(-2.9)
P 		259.4
(-3)
P 		302.3
(-1.4)
P 		420.3
(3)
P 		161
avr 324.8
(0.1) 		270.2
(-3) 		295.4
(-1.6) 		375.9
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 312.5
(0.2)
M 		301.2
(-0.3)
P 		252.4
(-2.6)
P 		372
(3)
P 		244.6
(-3)
M 		249.9
(-2.8)
P 		127
B 207.4
(-3)
P 		235.6
(-1.6)
P 		292.9
(1.4)
A 		238.7
(-1.4)
P 		324.1
(3)
P 		258
(-0.4)
P 		117
C 250.6
(-2)
P 		344.4
(3)
P 		317.1
(1.6)
P 		257.6
(-1.6)
P 		230.8
(-3)
P 		336.8
(2.6)
P 		114
avr 256.8
(-3) 		293.7
(3) 		287.5
(2) 		289.4
(2.3) 		266.5
(-1.4) 		281.6
(1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 138.9
(3)
M 		55.7
(-2.6)
P 		73.8
(-1.4)
P 		49.4
(-3)
P 		90
B 105.2
(3)
P 		72.7
(-2.5)
M 		69.8
(-3)
P 		78.8
(-1.5)
P 		35
C 87
(-0.2)
P 		74.6
(-2.4)
P 		105.4
(3)
P 		70.9
(-3)
P 		35
avr 110.4
(3) 		67.7
(-2.8) 		83
(-0.7) 		66.4
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 57.6
(-2.7)
M 		107.1
(3)
P 		55
(-3)
P 		94.4
(1.5)
P 		73.8
(-0.8)
M 		60.8
(-2.3)
P 		52
B 72.2
(-2.2)
P 		78.4
(-1.7)
P 		71.1
(-2.3)
A 		63.2
(-3)
P 		131.7
(3)
P 		96.2
(-0.1)
P 		69
C 92.9
(1)
P 		105.1
(2.2)
P 		80.7
(-0.2)
P 		51.8
(-3)
P 		74.7
(-0.7)
P 		112.8
(3)
P 		61
avr 74.2
(-1.9) 		96.9
(3) 		68.9
(-3) 		69.8
(-2.8) 		93.4
(2.3) 		89.9
(1.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185979_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17410
Sequence Type Exemplar sequence
Representative Public ID F01G12.2 NCBI
Target Description F01G12.2 /REP_DB=WormBase Gene ID /WP=CE04332 /TR=Q19097 /GB=AAA96214.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171810 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-7) (sur-7) mRNA, complete cds. 11/11 None
SNAP00000041957 ENSEMBL cdna:SNAP chromosome:CEL140:X:16376521:16379631:1 11/11 None
F01G12.2a ENSEMBL cdna:known chromosome:CEL140:X:16377920:16379631:1 gene:F01G12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171809 8/11 Cross Hyb Matching Probes A 
GENEFINDER00000041966 8/11 Cross Hyb Matching Probes None
F01G12.2b 8/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181707 2 1 NM_171809 185988_at (11)
NM_171810 185979_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16377974-16379631(+) 88.89 100.0
Public Domain and Genome References
Ensembl F01G12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96213 Suppressor of activated let-60 ras protein 7, isoform b [Caenorhabditis elegans] ref|NP_741942.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 0.0
blast AAA96214 Suppressor of activated let-60 ras protein 7, isoform a [Caenorhabditis elegans] ref|NP_741943.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 1.0E-156
blast AAA96213 Suppressor of activated let-60 ras protein 7, isoform b [Caenorhabditis elegans] ref|NP_741942.1| SUppressor of activated let-60 Ras family member (sur-7) [Caenorhabditis elegans] 1.0E-116
blast CAE69975 Hypothetical protein CBG16373 [Caenorhabditis briggsae] 4.0E-79
blast CAE69975 Hypothetical protein CBG16373 [Caenorhabditis briggsae] 8.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741943.1 2 38-60,75-97
F01G12.2a 2 38-60,75-97
SNAP00000041957 6 39-61,65-87,100-122,177-199,204-226,241-263
Sequence
Target Sequence 
>C. ELEGANS:185979_S_AT
gagctcgactactttttcggatggctcaatcatcatctggaacctgtcacgtctattttg
ctcaccatagtttgcatttcaatcgccatttattcattaatccgcaaaaaacaattcttg
ttagccgaaggaccaagggagttcaaaattgacgatatcagcagttcggtgaaggccaaa
aacagtaggcttgagaaagtggatcatgtgcatgccagttgtgaatggccgcaaggattt
acggtttctttgaaagcttacataaaggtaggtcaaacagaatatgggcacgggtggcta
agtggtagtggtgtagcactgtcacccaagaggtcgcaagttcaattcccccctcaaccc
gaaggttcactcagccggctcggaaaacgaaaggtagaaaagaccaacaaggattgggta
gcacaggctgcaagtgacttctacgagctcaaagcactcctccatcacgaaatcaaagca
caaggtgccaaagaagttgttgtcgaaccggttttcgttgaccaaaccgagcttaccaca
gattttatggatcccatctgcatttcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCGACTACTTTTTCGGATGGC 162 387 202 Antisense
ATCATCTGGAACCTGTCACGTCTAT 136 29 233 Antisense
TCACGTCTATTTTGCTCACCATAGT 104 627 248 Antisense
TGCATTTCAATCGCCATTTATTCAT 63 579 274 Antisense
TAGCACTGTCACCCAAGAGGTCGCA 326 651 515 Antisense
CAAGAGGTCGCAAGTTCAATTCCCC 375 185 528 Antisense
TTCACTCAGCCGGCTCGGAAAACGA 412 687 567 Antisense
GGTAGCACAGGCTGCAAGTGACTTC 323 501 618 Antisense
CACTCCTCCATCACGAAATCAAAGC 81 199 656 Antisense
ACCAAACCGAGCTTACCACAGATTT 215 85 722 Antisense
TATGGATCCCATCTGCATTTCAAGG 259 655 747 Antisense
Sequence Source Affymetrix Proprietary Database