[Home] | [Total List]

[185978_at]

Description H27M09.5 /REP_DB=WormBase Gene ID /WP=CE23827 /TR=Q9N5K4 /GB=AAF39904.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 30.2
(1)
A 		12
(-3)
A 		17.3
(-1.8)
A 		39.1
(3)
A 		27
B 19.9
(-1.4)
A 		51.8
(3)
A 		8.6
(-3)
A 		44.4
(2)
P 		43
C 12.1
(-2.8)
A 		9.3
(-3)
A 		36.9
(-1)
A 		90.2
(3)
P 		81
avr 20.7
(-3) 		24.4
(-2.4) 		20.9
(-3) 		57.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 58.9
(3)
A 		14.5
(-1.8)
A 		5.1
(-2.8)
A 		3.5
(-3)
A 		41.6
(1.1)
P 		29.6
(-0.2)
A 		55
B 12
(-2.5)
A 		7.3
(-3)
A 		37.8
(0.4)
A 		35.8
(0.2)
A 		27.9
(-0.7)
A 		61.2
(3)
A 		54
C 6.5
(-3)
A 		42.5
(2.1)
A 		21.2
(-0.9)
A 		10.7
(-2.4)
A 		48.6
(3)
A 		46.7
(2.7)
A 		42
avr 25.8
(-1.1) 		21.4
(-2) 		21.4
(-2) 		16.7
(-3) 		39.4
(1.7) 		45.8
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11
(3)
A 		2.6
(-3)
A 		4.5
(-1.6)
A 		5.7
(-0.8)
A 		8
B 6.4
(-0.6)
A 		12.8
(3)
A 		2
(-3)
A 		9.5
(1.2)
P 		11
C 4
(-2.4)
A 		2.7
(-3)
A 		12.9
(1.9)
A 		15.2
(3)
P 		13
avr 7.1
(-1.4) 		6
(-3) 		6.5
(-2.3) 		10.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.9
(2.1)
A 		5.2
(-0.8)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		12.6
(3)
P 		7.2
(0.2)
A 		12
B 4.2
(-2.5)
A 		2.4
(-3)
A 		9.2
(-1)
A 		9.5
(-0.9)
A 		11.3
(-0.4)
A 		22.8
(3)
A 		20
C 2.4
(-2.9)
A 		13
(1.8)
A 		5.4
(-1.6)
A 		2.2
(-3)
A 		15.7
(3)
A 		15.6
(3)
A 		14
avr 5.8
(-2.1) 		6.9
(-1.5) 		5.2
(-2.5) 		4.2
(-3) 		13.2
(1.9) 		15.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.703
Sequence Type Exemplar sequence
Representative Public ID H27M09.5 NCBI
Target Description H27M09.5 /REP_DB=WormBase Gene ID /WP=CE23827 /TR=Q9N5K4 /GB=AAF39904.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059558(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059558 NCBI Caenorhabditis elegans H27M09.5 (H27M09.5) mRNA, complete cds. 11/11 None
SNAP00000019135 ENSEMBL cdna:SNAP chromosome:CEL140:I:6854016:6854960:-1 11/11 None
GENEFINDER00000019140 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6854016:6854960:-1 11/11 None
H27M09.5 ENSEMBL cdna:known chromosome:CEL140:I:6854016:6855084:-1 gene:H27M09.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6853946-6855015(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H27M09.5
Entrez Gene 186791 Entrez gene
SwissProt Q9N5K4 EMBL-EBI
WormBase CE23827 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39904 Hypothetical protein H27M09.5 [Caenorhabditis elegans] ref|NP_491959.1| H27M09.5 [Caenorhabditis elegans] 9.0E-82
blast AAF39904 Hypothetical protein H27M09.5 [Caenorhabditis elegans] ref|NP_491959.1| H27M09.5 [Caenorhabditis elegans] 2.0E-66
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491959.1 1 12-34
H27M09.5 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:185978_AT
ggagaaatctccaagtagacgtgattttggaagaggaggtgatagagatagagatagaga
tggagaatccagaagaagtagttatagggatgaaaagagaagacgtgaaaattcacataa
gtcagccagatcaatgcctgtagaaaaaagcaacagctaccgaaattacaagaaatacga
tgacaaggtggaggatccaccacatgagaaacgaaattctgatgacgttcgttcagttta
tgtggatactggaaaatcaacatattccactgctgtaaagccatcaaatgataatccaaa
atcatattattctcttccaccaacatctccttcaaaggaaaaacccacaaaaaagatttc
acgaaattatttggctgatccattgtctccgggggataagaaatcagcaaaaatctcaac
gaaaaagttgatttctacaataaaaccaccaaaaacgctttctaaaaaatcagcaaaatc
tacgagaaatccattgaaatcgccttccaaaaggtctaatagtgtgagaccagaaaagaa
aaataaaatcatttcgaagaaggcgtccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAATCTCCAAGTAGACGTGAT 74 519 432 Antisense
AAGTCAGCCAGATCAATGCCTGTAG 126 157 550 Antisense
AAAGCAACAGCTACCGAAATTACAA 547 123 578 Antisense
GGAGGATCCACCACATGAGAAACGA 326 515 621 Antisense
GATGACGTTCGTTCAGTTTATGTGG 213 411 652 Antisense
AACATATTCCACTGCTGTAAAGCCA 80 139 690 Antisense
AAATCATATTATTCTCTTCCACCAA 707 117 730 Antisense
CTGATCCATTGTCTCCGGGGGATAA 301 237 806 Antisense
GAAATCCATTGAAATCGCCTTCCAA 539 361 917 Antisense
GAAATCGCCTTCCAAAAGGTCTAAT 670 359 927 Antisense
ATCATTTCGAAGAAGGCGTCCAAGA 280 29 979 Antisense
Sequence Source Affymetrix Proprietary Database