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[185977_s_at]

Description C02B10.2 /REP_DB=WormBase Gene ID /WP=CE24776 /TR=O44445 /GB=AAK68679.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 78      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 202.4
(-1.5)
P 		169.3
(-3)
P 		267.9
(1.5)
P 		301.5
(3)
P 		132
B 214.4
(-1.5)
P 		153
(-3)
P 		195.3
(-1.9)
P 		394.3
(3)
P 		241
C 254.2
(-1.7)
P 		277
(-1.2)
P 		194
(-3)
P 		465.9
(3)
P 		272
avr 223.7
(-2.2) 		199.8
(-3) 		219.1
(-2.4) 		387.2
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 301.7
(-1.2)
P 		225.3
(-3)
P 		232.2
(-2.8)
P 		273.4
(-1.8)
P 		422.3
(1.7)
P 		475.1
(3)
P 		250
B 185.7
(-3)
P 		185.3
(-3)
P 		185.1
(-3)
P 		225.5
(-2.5)
P 		347.2
(-0.8)
P 		626.2
(3)
P 		441
C 233
(-2.5)
P 		221.9
(-2.7)
P 		194.6
(-3)
P 		269.4
(-2.1)
P 		297.4
(-1.8)
P 		695.2
(3)
P 		501
avr 240.1
(-2.5) 		210.8
(-2.9) 		204
(-3) 		256.1
(-2.2) 		355.6
(-0.7) 		598.8
(3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 73.7
(3)
P 		36.7
(-3)
P 		70
(2.4)
P 		44.1
(-1.8)
P 		37
B 68.4
(1)
P 		37.8
(-3)
P 		45.3
(-2)
P 		84
(3)
P 		46
C 84.2
(3)
P 		79.6
(1.3)
P 		67.6
(-3)
P 		78.6
(1)
P 		17
avr 75.4
(3) 		51.4
(-3) 		61
(-0.6) 		68.9
(1.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 55.6
(-2.6)
P 		80.1
(-0.7)
P 		50.6
(-3)
P 		69.4
(-1.5)
P 		127.4
(3)
P 		115.7
(2.1)
P 		77
B 64.6
(-2.4)
P 		61.7
(-2.5)
P 		44.9
(-3)
P 		59.7
(-2.5)
P 		141.1
(0.1)
P 		233.5
(3)
P 		189
C 86.3
(-1.8)
P 		67.7
(-2.4)
P 		49.5
(-3)
P 		54.2
(-2.8)
P 		96.2
(-1.5)
P 		232.7
(3)
P 		183
avr 68.8
(-2.2) 		69.8
(-2.1) 		48.3
(-3) 		61.1
(-2.5) 		121.6
(0) 		194
(3) 		146
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185977_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10512
Sequence Type Exemplar sequence
Representative Public ID C02B10.2 NCBI
Target Description C02B10.2 /REP_DB=WormBase Gene ID /WP=CE24776 /TR=O44445 /GB=AAK68679.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068320 NCBI Caenorhabditis elegans C02B10.2 (C02B10.2) mRNA, complete cds. 11/11 None
SNAP00000004590 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5090568:5091023:-1 11/11 None
GENEFINDER00000004596 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5090568:5091026:-1 11/11 None
C02B10.2 ENSEMBL cdna:known chromosome:CEL140:IV:5090280:5091023:-1 gene:C02B10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5090573-5091029(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B10.2
Entrez Gene 177282 Entrez gene
SwissProt O44445 EMBL-EBI
WormBase CE24776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68679 Hypothetical protein C02B10.2 [Caenorhabditis elegans] ref|NP_500721.1| C02B10.2 [Caenorhabditis elegans] 5.0E-53
blast CAE72738 Hypothetical protein CBG19979 [Caenorhabditis briggsae] 4.0E-49
blast AAK68679 Hypothetical protein C02B10.2 [Caenorhabditis elegans] ref|NP_500721.1| C02B10.2 [Caenorhabditis elegans] 4.0E-45
blast CAE72738 Hypothetical protein CBG19979 [Caenorhabditis briggsae] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:185977_S_AT
atgtcgtcaactgctggaggcgaagtgtccattaattccggcgatcttctccttggaact
ctttccacttcgattacaaagcttgagcaacagattcgagcgactcagttgtctcaaaag
aaactaaattcagattgtgaaacaatggcagagtaccttcgagacctgagcgaatacaag
cagcctgtggacttgctcccctacgtcggaaaactaaatgattctacaattcgagtaaat
aatacacatcagaaactcgacgatctcctcgaacgtctcacaaaactccagcggcagatt
gctcgggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGTCAACTGCTGGAGGCGAAG 240 49 13 Antisense
GGCGAAGTGTCCATTAATTCCGGCG 650 533 31 Antisense
TGTCCATTAATTCCGGCGATCTTCT 285 557 38 Antisense
TGGAACTCTTTCCACTTCGATTACA 636 545 66 Antisense
GATTCGAGCGACTCAGTTGTCTCAA 246 433 105 Antisense
GGCAGAGTACCTTCGAGACCTGAGC 554 535 159 Antisense
GAGACCTGAGCGAATACAAGCAGCC 232 395 173 Antisense
TACAAGCAGCCTGTGGACTTGCTCC 110 643 187 Antisense
AAACTCGACGATCTCCTCGAACGTC 377 123 265 Antisense
ATCTCCTCGAACGTCTCACAAAACT 352 31 275 Antisense
CTCCAGCGGCAGATTGCTCGGGAAA 53 237 298 Antisense
Sequence Source Affymetrix Proprietary Database