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[185976_at]

Description F09E10.5 /REP_DB=WormBase Gene ID /WP=CE04341 /TR=Q19248 /GB=AAB52486.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-2.9)
A 		8.9
(3)
A 		3.8
(-3)
A 		4.4
(-2.3)
A 		5
B 2.7
(-3)
A 		13.5
(3)
A 		4.9
(-1.8)
A 		10.2
(1.2)
A 		11
C 5.9
(-0)
A 		6.4
(0.4)
A 		2.2
(-3)
A 		9.7
(3)
A 		8
avr 4.2
(-2.4) 		9.6
(3) 		3.6
(-3) 		8.1
(1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 8
(2.7)
A 		2.8
(-3)
A 		8.3
(3)
A 		4.1
(-1.6)
A 		5
(-0.6)
A 		6.4
(0.9)
A 		6
B 4.6
(0.6)
A 		4.3
(0.2)
A 		6.1
(3)
A 		2.3
(-3)
A 		3.2
(-1.6)
A 		3.2
(-1.6)
A 		4
C 4
(0.6)
A 		5.1
(3)
A 		4.1
(0.8)
A 		3.7
(-0.1)
A 		2.4
(-3)
A 		2.5
(-2.8)
A 		3
avr 5.5
(1.5) 		4.1
(-1.5) 		6.2
(3) 		3.4
(-3) 		3.5
(-2.8) 		4
(-1.7) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(0.7)
A 		1.9
(3)
A 		1
(-1.2)
A 		0.6
(-3)
A 		1
B 0.8
(-3)
A 		3.3
(3)
A 		1.1
(-2.3)
A 		2.2
(0.4)
A 		3
C 2
(3)
A 		1.8
(2)
A 		0.8
(-3)
A 		1.6
(1)
A 		1
avr 1.4
(-1.2) 		2.3
(3) 		1
(-3) 		1.5
(-0.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.5
(0.8)
A 		1
(-3)
A 		1.8
(3)
A 		1
(-3)
A 		1.5
(0.8)
A 		1.6
(1.5)
A 		1
B 1.6
(3)
A 		1.4
(1.8)
A 		1.5
(2.4)
A 		0.6
(-3)
A 		1.3
(1.2)
A 		1.2
(0.6)
A 		1
C 1.5
(3)
A 		1.5
(3)
A 		1
(-1.3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
avr 1.5
(3) 		1.3
(1.3) 		1.4
(2.1) 		0.8
(-3) 		1.2
(0.4) 		1.2
(0.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18257
Sequence Type Exemplar sequence
Representative Public ID F09E10.5 NCBI
Target Description F09E10.5 /REP_DB=WormBase Gene ID /WP=CE04341 /TR=Q19248 /GB=AAB52486.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075882 NCBI Caenorhabditis elegans F09E10.5 (F09E10.5) mRNA, complete cds. 11/11 None
SNAP00000026362 ENSEMBL cdna:SNAP chromosome:CEL140:X:1489667:1492266:-1 11/11 None
GENEFINDER00000026374 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1489714:1494351:-1 11/11 None
F09E10.5 ENSEMBL cdna:known chromosome:CEL140:X:1490124:1494351:-1 gene:F09E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1490123-1494351(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E10.5
Entrez Gene 184248 Entrez gene
SwissProt Q19248 EMBL-EBI
WormBase CE04341 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52486 Hypothetical protein F09E10.5 [Caenorhabditis elegans] ref|NP_508283.1| F09E10.5 [Caenorhabditis elegans] 1.0E-155
blast AAB52486 Hypothetical protein F09E10.5 [Caenorhabditis elegans] ref|NP_508283.1| F09E10.5 [Caenorhabditis elegans] 1.0E-154
blast AAB52486 Hypothetical protein F09E10.5 [Caenorhabditis elegans] ref|NP_508283.1| F09E10.5 [Caenorhabditis elegans] 1.0E-132
blast CAE56722 Hypothetical protein CBG24509 [Caenorhabditis briggsae] 1.0E-110
blast CAE56722 Hypothetical protein CBG24509 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:185976_AT
attttgttctggaccgatgtgtgcttcatatgctccaaatgtttcatgagactatatcta
gttatcataacggcactgttgatgaggaattttatagaaagcttcatgtttttggaggac
ggtacaggtcgttggcgccgttggtggctgttgaggagtactttcatttgttcaatttat
gggcggagaaacatattgacttcatttctctcacatgctacgaaggtccagtatgcaata
atgacaagaaaatcatagaaagtgtctggaaaaagattatacaaagtatcaaaattcatt
ttgtgtacggttggcaccacaagaagtacacaatgaccagagaggaaatggaatattttc
acaaggacaaaactgtcgctgaaccgaccagatcgagacttatcacaaaactagcacgtc
tgatgagcagggagagtttcagtgacgctagcattgaggagaaggcgtctccgacaagga
agctgtcgcatggtagttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTGTTCTGGACCGATGTGTGCT 145 15 278 Antisense
GATGTGTGCTTCATATGCTCCAAAT 353 409 293 Antisense
GGAGGACGGTACAGGTCGTTGGCGC 710 391 391 Antisense
GCGCCGTTGGTGGCTGTTGAGGAGT 647 287 412 Antisense
TATTGACTTCATTTCTCTCACATGC 269 665 471 Antisense
CTCTCACATGCTACGAAGGTCCAGT 229 231 485 Antisense
GTGTACGGTTGGCACCACAAGAAGT 16 487 580 Antisense
AACTGTCGCTGAACCGACCAGATCG 183 143 648 Antisense
GGGAGAGTTTCAGTGACGCTAGCAT 538 495 707 Antisense
GAAGGCGTCTCCGACAAGGAAGCTG 581 333 738 Antisense
AAGGAAGCTGTCGCATGGTAGTTTA 414 161 753 Antisense
Sequence Source Affymetrix Proprietary Database