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[185974_s_at]

Description Y64G10A.7 /REP_DB=WormBase Gene ID /WP=CE24549 /TR=Q9TVQ2 /GB=CAB60454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 204.2
(3)
P 		148.6
(-3)
P 		168.4
(-0.9)
P 		189.1
(1.4)
P 		56
B 192.6
(1.4)
P 		233.3
(3)
P 		127.8
(-1.1)
P 		79.1
(-3)
M 		154
C 148.9
(-1.8)
P 		134.5
(-3)
P 		204.9
(3)
P 		162.8
(-0.6)
P 		70
avr 181.9
(3) 		172.1
(1.5) 		167
(0.7) 		143.7
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 363.1
(3)
P 		257.2
(0.7)
P 		155.4
(-1.4)
P 		82.2
(-3)
P 		171.6
(-1.1)
P 		153.9
(-1.5)
P 		281
B 250.1
(3)
P 		220
(1.8)
P 		122.8
(-2)
P 		141
(-1.3)
P 		144.4
(-1.2)
P 		98.7
(-3)
P 		151
C 313.1
(3)
P 		267
(1.4)
P 		223.5
(-0.1)
P 		202.2
(-0.8)
P 		139.4
(-3)
P 		146.5
(-2.8)
P 		174
avr 308.8
(3) 		248.1
(0.9) 		167.2
(-1.8) 		141.8
(-2.7) 		151.8
(-2.4) 		133
(-3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 74.3
(3)
P 		32.3
(-2.4)
P 		44
(-0.9)
P 		27.7
(-3)
P 		47
B 61.4
(3)
P 		57.6
(2.5)
P 		29.6
(-1.3)
P 		16.9
(-3)
M 		45
C 49.3
(-0)
P 		38.7
(-1.5)
P 		71.4
(3)
P 		27.4
(-3)
P 		44
avr 61.7
(3) 		42.9
(0) 		48.3
(0.9) 		24
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 66.9
(0.9)
P 		91.5
(3)
P 		33.8
(-1.9)
P 		20.8
(-3)
P 		51.8
(-0.4)
P 		37.5
(-1.6)
P 		71
B 87
(3)
P 		73.2
(1.6)
P 		29.8
(-3)
P 		37.4
(-2.2)
P 		58.7
(0)
P 		36.8
(-2.3)
P 		57
C 116
(3)
P 		81.5
(0.3)
P 		56.9
(-1.7)
P 		40.7
(-3)
P 		45.1
(-2.6)
P 		49
(-2.3)
P 		75
avr 90
(3) 		82.1
(2.2) 		40.2
(-2.2) 		33
(-3) 		51.9
(-1) 		41.1
(-2.1) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185974_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8677
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.7 NCBI
Target Description Y64G10A.7 /REP_DB=WormBase Gene ID /WP=CE24549 /TR=Q9TVQ2 /GB=CAB60454.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070336 NCBI Caenorhabditis elegans Y64G10A.7 (Y64G10A.7) mRNA, complete cds. 11/11 None
Y64G10A.7 ENSEMBL cdna:known chromosome:CEL140:IV:14302239:14319531:1 gene:Y64G10A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008003 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008027 4/11 Cross Hyb Matching Probes None
SNAP00000010758 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010761 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14302244-14319262(+) 99.54 100.0
Public Domain and Genome References
Gene Title
Ensembl Y64G10A.7
Entrez Gene 178377 Entrez gene
SwissProt Q9TVQ2 EMBL-EBI
WormBase CE24549 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602743_AT similar to EGF-like-domain, multiple 3 cfa
CANINE_2:CFAAFFX.29783.1.S1_S_AT similar to EGF-like-domain, multiple 3 cfa
CANINE_2:CFAAFFX.29786.1.S1_S_AT similar to EGF-like-domain, multiple 3 cfa
CHICKEN:GGAAFFX.678.1.S1_AT similar to MEGF6 gga
CHICKEN:GGAAFFX.678.2.S1_AT similar to MEGF6 gga
CHICKEN:GGAAFFX.678.3.S1_S_AT similar to MEGF6 gga
CHICKEN:GGAAFFX.678.4.S1_S_AT similar to MEGF6 gga
CHICKEN:GGAAFFX.678.5.S1_S_AT similar to MEGF6 gga
MG-U74BV2:112499_AT EGF-like-domain, multiple 3 mm
MG-U74BV2:163471_AT EGF-like-domain, multiple 3 mm
MOE430B:1437058_AT EGF-like-domain, multiple 3 mm
MOUSE430_2:1437058_AT EGF-like-domain, multiple 3 mm
MOE430B:1437057_AT EGF-like-domain, multiple 3 mm
MOUSE430_2:1437057_AT EGF-like-domain, multiple 3 mm
MU19KSUBA:TC21950_AT EGF-like-domain, multiple 3, mRNA (cDNA clone MGC:37088 IMAGE:4951563) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60454 Hypothetical protein Y64G10A.7 [Caenorhabditis elegans] emb|CAB57911.1| Hypothetical protein Y64G10A.7 [Caenorhabditis elegans] ref|NP_502737.1| Y64G10A.7 [Caenorhabditis elegans] 0.0
blast T27283 hypothetical protein Y64G10A.f - Caenorhabditis elegans 0.0
blast CAE71745 Hypothetical protein CBG18730 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 4.5E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.0E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 8.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 7.1E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 6.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.3E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 5.4E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.5E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.4E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.6E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-4
Sequence
Target Sequence 
>C. ELEGANS:185974_S_AT
aaggatgttgtgattgtccgcctggaagatacggtagtagatgtcagttttcgtgtccca
atggattctacggatggtattgctcacagtcttgttcctgtcagaatggggctcattgtg
atggagccgatgggcggtgtctgtgtccagcaggttttcaggtaaagttggcgaataaaa
aaaagaatgacctcgaactgggcgacaaatgtgaacaaaagtgttcagaaggatcatttg
ggccagcatgcagtcaacagtgtaattgtggaaagtacaaatgcgatgcgacagatggaa
aatgcatatgtccagttggaagacacggacctctttgtgaagaggagtgtagacctggaa
gatatggacagtcttgtcagaataaatgtcaatgttttaatggagccacgtgtgatgcta
gaactggccaatgcagttgctccccgggatggctcggcccaacgtgtcaaattgaaatga
tggacccgaacaatgtggcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATGTTGTGATTGTCCGCCTGG 138 161 4460 Antisense
AGTAGATGTCAGTTTTCGTGTCCCA 200 63 4495 Antisense
GGATTCTACGGATGGTATTGCTCAC 610 507 4522 Antisense
TATTGCTCACAGTCTTGTTCCTGTC 490 663 4537 Antisense
TGTTCCTGTCAGAATGGGGCTCATT 311 563 4552 Antisense
TGATGGAGCCGATGGGCGGTGTCTG 238 567 4578 Antisense
GAATGACCTCGAACTGGGCGACAAA 265 331 4644 Antisense
GGATCATTTGGGCCAGCATGCAGTC 71 513 4690 Antisense
GGAAGACACGGACCTCTTTGTGAAG 447 529 4777 Antisense
ATGGAGCCACGTGTGATGCTAGAAC 286 51 4859 Antisense
GATGGACCCGAACAATGTGGCAAAT 677 403 4938 Antisense
Sequence Source Affymetrix Proprietary Database