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[185973_at]

Description Y52B11C.1 /REP_DB=WormBase Gene ID /WP=CE19222 /TR=Q9XXB9 /GB=CAA19544.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      6grp_total > 46      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 151
(3)
P 		101.9
(-3)
A 		133.1
(0.8)
A 		123.1
(-0.4)
A 		49
B 139.6
(2)
P 		151.3
(3)
P 		139.4
(1.9)
A 		84.1
(-3)
A 		67
C 161
(3)
P 		134.9
(0.5)
A 		97.4
(-3)
A 		114.5
(-1.4)
A 		64
avr 150.5
(3) 		129.4
(0.1) 		123.3
(-0.8) 		107.2
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 116.3
(-1.9)
A 		107.4
(-3)
A 		156.2
(3)
A 		120.9
(-1.3)
A 		107.6
(-3)
P 		121.1
(-1.3)
A 		49
B 157.7
(3)
P 		132.4
(-0.9)
P 		123.5
(-2.2)
P 		118.6
(-3)
P 		139.9
(0.3)
A 		128.7
(-1.5)
P 		39
C 121
(-0.5)
A 		154.6
(2.9)
M 		115.9
(-1)
A 		146.1
(2.1)
A 		96.9
(-3)
A 		155.2
(3)
M 		58
avr 131.7
(2) 		131.5
(2) 		131.9
(2.1) 		128.5
(1.1) 		114.8
(-3) 		135
(3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 55
(3)
P 		22.1
(-2.3)
A 		34.8
(-0.3)
A 		18
(-3)
A 		37
B 44.5
(3)
P 		37.4
(1.4)
P 		32.3
(0.2)
A 		17.9
(-3)
A 		27
C 53.3
(3)
P 		38.8
(0.4)
A 		33.9
(-0.4)
A 		19.3
(-3)
A 		34
avr 50.9
(3) 		32.8
(-0.3) 		33.7
(-0.2) 		18.4
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21.4
(-3)
A 		38.2
(3)
A 		34
(1.5)
A 		30.7
(0.3)
A 		32.5
(1)
P 		29.5
(-0.1)
A 		17
B 54.9
(2.6)
P 		44.1
(0.1)
P 		30
(-3)
P 		31.4
(-2.7)
P 		56.9
(3)
A 		48
(1)
P 		27
C 44.9
(1.1)
A 		47.2
(1.7)
M 		29.5
(-3)
A 		29.4
(-3)
A 		31.3
(-2.5)
A 		52
(3)
M 		23
avr 40.4
(1.7) 		43.2
(3) 		31.2
(-2.7) 		30.5
(-3) 		40.2
(1.6) 		43.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1187
Sequence Type Exemplar sequence
Representative Public ID Y52B11C.1 NCBI
Target Description Y52B11C.1 /REP_DB=WormBase Gene ID /WP=CE19222 /TR=Q9XXB9 /GB=CAA19544.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060472 NCBI Caenorhabditis elegans Y52B11C.1 (Y52B11C.1) mRNA, complete cds. 11/11 None
SNAP00000041739 ENSEMBL cdna:SNAP chromosome:CEL140:I:11170913:11178075:-1 11/11 None
GENEFINDER00000041740 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11171935:11177003:-1 11/11 None
Y52B11C.1 ENSEMBL cdna:known chromosome:CEL140:I:11175667:11176860:-1 gene:Y52B11C.1 11/11 None
F28D9.4 ENSEMBL cdna:known chromosome:CEL140:I:11175669:11185850:-1 gene:F28D9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11175597-11176791(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y52B11C.1
F28D9.4
Entrez Gene 3565275 Entrez gene
SwissProt Q9XXB9 EMBL-EBI
WormBase CE19222 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27605.1.S1_AT similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) cfa
CANINE_2:CFAAFFX.27605.1.S1_S_AT similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) cfa
CANINE_2:CFAAFFX.27607.1.S1_AT similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase (Phosphatidylinositol-glycan biosynthesis, class L protein) (PIG-L) cfa
DROSOPHILA_2:1627257_AT dm
DROSGENOME1:150238_AT dm
HG-U133_PLUS_2:232262_AT phosphatidylinositol glycan, class L hs
HG-U133B:232262_AT phosphatidylinositol glycan, class L hs
HG-U133_PLUS_2:205873_AT phosphatidylinositol glycan, class L hs
HG-U133A:205873_AT phosphatidylinositol glycan, class L hs
HG-FOCUS:205873_AT phosphatidylinositol glycan, class L hs
HG-U133A_2:205873_AT phosphatidylinositol glycan, class L hs
U133_X3P:G4758921_3P_AT phosphatidylinositol glycan, class L hs
U133_X3P:HS.27008.1.S1_3P_AT phosphatidylinositol glycan, class L hs
U133_X3P:HS.257796.0.A1_3P_AT phosphatidylinositol glycan, class L hs
HG-U133A_2:213889_AT phosphatidylinositol glycan, class L hs
HG-U133_PLUS_2:213889_AT phosphatidylinositol glycan, class L hs
HG-U133A:213889_AT phosphatidylinositol glycan, class L hs
HG-U95AV2:34496_AT phosphatidylinositol glycan, class L hs
HG-U95B:50650_AT Phosphatidylinositol glycan, class L hs
HG-U95C:64187_AT Phosphatidylinositol glycan, class L hs
HU35KSUBB:RC_H48488_AT Phosphatidylinositol glycan, class L hs
HU35KSUBB:RC_Z38346_AT Phosphatidylinositol glycan, class L hs
MG-U74BV2:116344_AT Phosphatidylinositol glycan, class L, mRNA (cDNA clone IMAGE:874131) mm
MOE430B:1440965_AT Phosphatidylinositol glycan, class L, mRNA (cDNA clone IMAGE:874131) mm
MOUSE430_2:1440965_AT Phosphatidylinositol glycan, class L, mRNA (cDNA clone IMAGE:874131) mm
MU19KSUBB:TC33398_AT Phosphatidylinositol glycan, class L, mRNA (cDNA clone IMAGE:874131) mm
MU19KSUBB:TC34717_AT Phosphatidylinositol glycan, class L, mRNA (cDNA clone IMAGE:874131) mm
RG-U34A:D88364_AT phosphatidylinositol glycan, class L rn
RAE230A:1398309_AT phosphatidylinositol glycan, class L rn
RAT230_2:1398309_AT phosphatidylinositol glycan, class L rn
YEAST_2:1773524_AT ER membrane protein involved in the second step of glycosylphosphatidylinositol (GPI) anchor assembly, the de-N-acetylation of the N-acetylglucosaminylphosphatidylinositol intermediate; functional homolog of human PIG-Lp Sc
Protein Similarities
Method ID Description E-Value
blast CAA19544 Hypothetical protein Y52B11C.1 [Caenorhabditis elegans] ref|NP_492873.1| Y52B11C.1 [Caenorhabditis elegans] 3.0E-72
blast CAA19544 Hypothetical protein Y52B11C.1 [Caenorhabditis elegans] ref|NP_492873.1| Y52B11C.1 [Caenorhabditis elegans] 2.0E-70
blast CAA19544 Hypothetical protein Y52B11C.1 [Caenorhabditis elegans] ref|NP_492873.1| Y52B11C.1 [Caenorhabditis elegans] 1.0E-68
blast CAB54229 Hypothetical protein F28D9.4 [Caenorhabditis elegans] ref|NP_492874.1| F28D9.4 [Caenorhabditis elegans] 3.0E-63
blast CAE63486 Hypothetical protein CBG07954 [Caenorhabditis briggsae] 4.0E-62
blast CAE63486 Hypothetical protein CBG07954 [Caenorhabditis briggsae] 4.0E-61
blast CAE63486 Hypothetical protein CBG07954 [Caenorhabditis briggsae] 5.0E-61
blast CAE63487 Hypothetical protein CBG07955 [Caenorhabditis briggsae] 7.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492873.1 1 2-21
Y52B11C.1 1 2-21
F28D9.4 1 85-107
SNAP00000041739 1 49-68
GENEFINDER00000041740 1 48-67
Sequence
Target Sequence 
>C. ELEGANS:185973_AT
attaatactgctcatcgtcactcttctcctcgttcttctactcattttcgctgttcgttc
tcatccgattccactgctctcacaatctcgtattcttttgctcattgctcatcctgatga
tgagacaatgttcttttcgccgactattcgtgctcttctacaagctggtcatcgtgtctt
tgtcctttgtatttcgaatggaaatttcgatggattgggtaaaatccgtgcccgtgagct
gtcgcgtgctgcctcgaagctgggaatctcagcgagtgacgtcatctgcctcgattatga
cgaatttgccgatggtgacacgtggaatcgcaacgcactgtgccaaattgtgatgcgaca
cgttgaagtacttgctgccgatactgtcatctcatttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAATACTGCTCATCGTCACTCTT 88 13 21 Antisense
GCTCTCACAATCTCGTATTCTTTTG 559 299 96 Antisense
GTATTCTTTTGCTCATTGCTCATCC 290 453 110 Antisense
CAATGTTCTTTTCGCCGACTATTCG 602 181 146 Antisense
TTCGTGCTCTTCTACAAGCTGGTCA 542 695 167 Antisense
GTGTCTTTGTCCTTTGTATTTCGAA 147 487 194 Antisense
GCTGCCTCGAAGCTGGGAATCTCAG 307 297 268 Antisense
TCTCAGCGAGTGACGTCATCTGCCT 494 611 287 Antisense
TGGAATCGCAACGCACTGTGCCAAA 220 547 343 Antisense
GACACGTTGAAGTACTTGCTGCCGA 664 367 377 Antisense
CTGCCGATACTGTCATCTCATTTGA 137 237 395 Antisense
Sequence Source Affymetrix Proprietary Database