[Home] | [Total List]

[185972_at]

Description H42K12.3 /REP_DB=WormBase Gene ID /WP=CE11614 /TR=O17347 /GB=AAB71266.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 54      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2271
1 2 3 4 range
A 2.2
(-3)
A 		2071.2
(3)
P 		2004.3
(2.8)
P 		31.5
(-2.9)
A 		2069
B 7
(-3)
A 		2162.6
(2.7)
P 		2272.7
(3)
P 		22.7
(-3)
A 		2266
C 2.9
(-3)
A 		1890.9
(2.3)
P 		2136.4
(3)
P 		4.1
(-3)
A 		2134
avr 4
(-3) 		2041.6
(2.7) 		2137.8
(3) 		19.4
(-3) 		2134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1700
1 2 3 4 5 6 range
A 437.8
(-2.6)
P 		1559.6
(1.5)
P 		848
(-1.1)
P 		1949.9
(3)
P 		1601.2
(1.7)
P 		339.2
(-3)
P 		1611
B 350.3
(-2.9)
P 		1340.8
(0.7)
P 		950.8
(-0.7)
P 		1988
(3)
P 		1490.8
(1.2)
P 		315.8
(-3)
P 		1672
C 511.6
(-2.3)
P 		1321.4
(0.5)
P 		935
(-0.8)
P 		1577.7
(1.5)
P 		2016
(3)
P 		318.1
(-3)
P 		1698
avr 433.2
(-2.6) 		1407.3
(1.3) 		911.3
(-0.7) 		1838.5
(3) 		1702.7
(2.5) 		324.4
(-3) 		1514
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 744
1 2 3 4 range
A 0.8
(-3)
A 		449.6
(2.1)
P 		524
(3)
P 		4.6
(-3)
A 		523
B 2.2
(-3)
A 		534.1
(3)
P 		526.6
(2.9)
P 		4.8
(-3)
A 		532
C 1
(-3)
A 		543.7
(1.4)
P 		744.6
(3)
P 		0.7
(-3)
A 		744
avr 1.3
(-3) 		509.1
(2.1) 		598.4
(3) 		3.4
(-3) 		597

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 80.7
(-3)
P 		554.7
(3)
P 		184.7
(-1.7)
P 		494.5
(2.2)
P 		483.2
(2.1)
P 		82.6
(-3)
P 		474
B 121.9
(-2.9)
P 		446.3
(1)
P 		230.9
(-1.6)
P 		526.5
(2)
P 		605.7
(3)
P 		117.8
(-3)
P 		488
C 189.6
(-2.1)
P 		403.2
(0.3)
P 		238
(-1.6)
P 		317.3
(-0.7)
P 		652.3
(3)
P 		106.5
(-3)
P 		546
avr 130.7
(-2.6) 		468.1
(1.6) 		217.9
(-1.5) 		446.1
(1.3) 		580.4
(3) 		102.3
(-3) 		478
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18225
Sequence Type Exemplar sequence
Representative Public ID H42K12.3 NCBI
Target Description H42K12.3 /REP_DB=WormBase Gene ID /WP=CE11614 /TR=O17347 /GB=AAB71266.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075839 NCBI Caenorhabditis elegans H42K12.3 (H42K12.3) mRNA, complete cds. 11/11 A 
SNAP00000010277 ENSEMBL cdna:SNAP chromosome:CEL140:X:1311616:1316523:1 11/11 None
GENEFINDER00000010281 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1311616:1316523:1 11/11 None
H42K12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:1311598:1316565:1 gene:H42K12.3 11/11 None
H42K12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:1311600:1316631:1 gene:H42K12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1311615-1316523(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H42K12.3
Entrez Gene 180474 Entrez gene
SwissProt O17347 EMBL-EBI
WormBase CE11614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71266 Hypothetical protein H42K12.3 [Caenorhabditis elegans] ref|NP_508240.1| H42K12.3 [Caenorhabditis elegans] 0.0
blast CAE63570 Hypothetical protein CBG08058 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 6.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.3E-22
Sequence
Target Sequence 
>C. ELEGANS:185972_AT
ggctccaaaacgcatcaaggcacaccttcacaagaagatcaagaagcacccaaagaactt
tggatccaagacttatgagattctgaagaagcaagaaactgtcaagaagtcaaagattga
gttcccagaaattgaagagcaagaaatcacagaagactctgcggattcttctagagccat
tgagccacaagagccagaggagacctacttctccgactggtctgactggactccatgcac
aaagagcaacgagcgacaggtccgtagaagacggtgcctgaacttgagaaaatgtctcgg
agctttgatgcaagttcagaactgcccagagattattccaacaagcactccacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCAAAACGCATCAAGGCACAC 403 539 954 Antisense
GCATCAAGGCACACCTTCACAAGAA 589 307 965 Antisense
GACTCTGCGGATTCTTCTAGAGCCA 432 371 1108 Antisense
GAGCCATTGAGCCACAAGAGCCAGA 447 385 1127 Antisense
CAGAGGAGACCTACTTCTCCGACTG 456 205 1148 Antisense
TGGTCTGACTGGACTCCATGCACAA 687 549 1171 Antisense
GAGCAACGAGCGACAGGTCCGTAGA 362 391 1197 Antisense
GTAGAAGACGGTGCCTGAACTTGAG 571 435 1217 Antisense
GAAAATGTCTCGGAGCTTTGATGCA 10 355 1241 Antisense
GAACTGCCCAGAGATTATTCCAACA 72 349 1272 Antisense
ATTATTCCAACAAGCACTCCACAAA 479 13 1285 Antisense
Sequence Source Affymetrix Proprietary Database