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[185971_at]

Description W05G11.5 /REP_DB=WormBase Gene ID /WP=CE14632 /TR=O44905 /GB=AAC71145.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 38.7
(3)
A 		3.2
(-3)
A 		8
(-2.2)
A 		36.5
(2.6)
A 		36
B 16.3
(-1.2)
A 		37
(3)
A 		7.1
(-3)
A 		35.7
(2.7)
A 		30
C 23.7
(-1.4)
A 		59.7
(3)
A 		10.4
(-3)
A 		32.5
(-0.3)
A 		49
avr 26.2
(1) 		33.3
(2.6) 		8.5
(-3) 		34.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 39.8
(1)
A 		34.6
(-0.1)
A 		20.8
(-3)
A 		48.9
(3)
A 		49
(3)
A 		30.7
(-0.9)
A 		28
B 33.4
(-0.5)
A 		33.8
(-0.4)
A 		60.4
(3)
A 		43.3
(0.8)
A 		36.9
(-0)
A 		13.5
(-3)
A 		47
C 35.3
(-1.6)
A 		53.8
(1.4)
A 		56.7
(1.9)
A 		63.7
(3)
A 		29.3
(-2.6)
A 		26.6
(-3)
A 		37
avr 36.2
(-0.3) 		40.7
(0.6) 		46
(1.7) 		52
(3) 		38.4
(0.1) 		23.6
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.1
(3)
A 		0.7
(-3)
A 		2.1
(-2.4)
A 		5.3
(-0.9)
A 		13
B 5.2
(-0.2)
A 		9.1
(3)
A 		1.7
(-3)
A 		7.6
(1.8)
A 		7
C 7.8
(-1.1)
A 		17.2
(3)
A 		3.6
(-3)
A 		5.5
(-2.2)
A 		14
avr 9
(3) 		9
(3) 		2.5
(-3) 		6.1
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.3
(-1.4)
A 		12.3
(1.5)
A 		4.5
(-3)
A 		12.4
(1.6)
A 		14.8
(3)
A 		7.5
(-1.3)
A 		10
B 11.6
(1)
A 		11.3
(0.8)
A 		14.7
(2.8)
A 		11.5
(0.9)
A 		15
(3)
A 		5
(-3)
A 		10
C 13.1
(0.4)
A 		16.4
(3)
A 		14.4
(1.4)
A 		12.8
(0.1)
A 		9.5
(-2.5)
A 		8.9
(-3)
A 		8
avr 10.7
(0.5) 		13.3
(3) 		11.2
(1) 		12.2
(1.9) 		13.1
(2.8) 		7.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8239
Sequence Type Exemplar sequence
Representative Public ID W05G11.5 NCBI
Target Description W05G11.5 /REP_DB=WormBase Gene ID /WP=CE14632 /TR=O44905 /GB=AAC71145.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064732(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064732 NCBI Caenorhabditis elegans W05G11.5 (W05G11.5) mRNA, complete cds. 11/11 None
W05G11.5 ENSEMBL cdna:known chromosome:CEL140:III:59371:61144:-1 gene:W05G11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017786 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017790 8/11 Cross Hyb Matching Probes None
SNAP00000017787 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:59370-61144(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05G11.5
Entrez Gene 189221 Entrez gene
SwissProt O44905 EMBL-EBI
WormBase CE14632 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71145 Hypothetical protein W05G11.5 [Caenorhabditis elegans] ref|NP_497133.1| W05G11.5 [Caenorhabditis elegans] 1.0E-169
blast CAB05524 Hypothetical protein F57C2.2 [Caenorhabditis elegans] ref|NP_497015.1| F57C2.2 [Caenorhabditis elegans] 2.0E-32
blast CAB05523 Hypothetical protein F57C2.1 [Caenorhabditis elegans] ref|NP_497016.1| F57C2.1 [Caenorhabditis elegans] 8.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 4.6E-26
Sequence
Target Sequence 
>C. ELEGANS:185971_AT
aaaacctaggccttgttgcatttgaatatgtattctgtcttcattacaacccaagatttc
tttcctttcattcgagctacttccgcaagcttttctcgtcaaacttcaaagaagctcaat
tgaccgaaattcctatcagggacgtttcttacgaagatttctgtcttttgttaagcacaa
tctatcctaatatgatttttccgaatgatgaaactgccgataaacttctggaattggctg
atcgttttttgatgccagctgtaaccaacatggtgggatttcatctttgtcacagtgaca
aattagaatccatgtggggctccaaggtgcattcggcaaactgcccaccaaataaggctc
gcaagaccaaccgtttagtctgcgtctctcactcttcagtactctcttcattgaaacaat
tcaagacggaacttcgcgccaaggtcgcgacagaatttatcaaaaactacgacttgctgg
gagcaatcgagaaagccgaccagttgatcagttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACCTAGGCCTTGTTGCATTTGA 283 131 362 Antisense
GTATTCTGTCTTCATTACAACCCAA 266 453 391 Antisense
CCAAGATTTCTTTCCTTTCATTCGA 185 277 412 Antisense
TTTCATTCGAGCTACTTCCGCAAGC 49 673 427 Antisense
CGCAAGCTTTTCTCGTCAAACTTCA 51 255 445 Antisense
GGGATTTCATCTTTGTCACAGTGAC 689 495 636 Antisense
GAATCCATGTGGGGCTCCAAGGTGC 121 329 667 Antisense
AAGGTGCATTCGGCAAACTGCCCAC 257 159 685 Antisense
AGACCAACCGTTTAGTCTGCGTCTC 78 71 725 Antisense
ATTCAAGACGGAACTTCGCGCCAAG 262 11 780 Antisense
AAAGCCGACCAGTTGATCAGTTCCA 708 123 853 Antisense
Sequence Source Affymetrix Proprietary Database