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[185970_at]

Description ZK1055.4 /REP_DB=WormBase Gene ID /WP=CE18473 /TR=O76444 /GB=AAC19262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 55.8
(-1.5)
A 		187
(2.9)
P 		189.5
(3)
P 		12.7
(-3)
A 		177
B 15.9
(-3)
A 		138
(2.4)
P 		150.4
(3)
P 		21.4
(-2.8)
A 		135
C 85.1
(-0)
M 		150.3
(2.7)
P 		158.7
(3)
P 		12.1
(-3)
A 		147
avr 52.3
(-1.5) 		158.4
(2.7) 		166.2
(3) 		15.4
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 54.3
(-3)
A 		195
(3)
P 		110.5
(-0.6)
P 		110.7
(-0.6)
P 		119.3
(-0.2)
A 		75.8
(-2.1)
A 		141
B 53.8
(-3)
A 		164.8
(3)
P 		114.3
(0.3)
P 		120.8
(0.6)
A 		83
(-1.4)
P 		68.9
(-2.2)
A 		111
C 52.2
(-3)
A 		165.3
(3)
P 		70.1
(-2.1)
A 		143.4
(1.8)
P 		78.1
(-1.6)
P 		64.3
(-2.4)
P 		113
avr 53.4
(-3) 		175
(3) 		98.3
(-0.8) 		125
(0.5) 		93.5
(-1) 		69.7
(-2.2) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 20.3
(-0.7)
A 		40.6
(1.9)
P 		49.5
(3)
P 		1.9
(-3)
A 		48
B 5.1
(-2.9)
A 		34.1
(2.8)
P 		34.9
(3)
P 		4.6
(-3)
A 		30
C 28.2
(-0.1)
M 		43.2
(1.6)
P 		55.3
(3)
P 		2
(-3)
A 		53
avr 17.9
(-0.9) 		39.3
(2) 		46.6
(3) 		2.8
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 10
(-3)
A 		69.4
(3)
P 		24.1
(-1.6)
P 		28.1
(-1.2)
P 		36
(-0.4)
A 		18.5
(-2.1)
A 		59
B 18.7
(-3)
A 		54.9
(3)
P 		27.8
(-1.5)
P 		32
(-0.8)
A 		33.7
(-0.5)
P 		25.7
(-1.8)
A 		36
C 19.4
(-2.7)
A 		50.4
(3)
P 		17.8
(-3)
A 		28.8
(-1)
P 		25.3
(-1.6)
P 		21.5
(-2.3)
P 		33
avr 16
(-3) 		58.2
(3) 		23.2
(-2) 		29.6
(-1.1) 		31.7
(-0.8) 		21.9
(-2.2) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185970_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11505
Sequence Type Exemplar sequence
Representative Public ID ZK1055.4 NCBI
Target Description ZK1055.4 /REP_DB=WormBase Gene ID /WP=CE18473 /TR=O76444 /GB=AAC19262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072273 NCBI Caenorhabditis elegans ZK1055.4 (ZK1055.4) mRNA, complete cds. 11/11 None
SNAP00000018288 ENSEMBL cdna:SNAP chromosome:CEL140:V:6588193:6591645:1 11/11 None
GENEFINDER00000018299 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6588226:6589965:1 11/11 None
ZK1055.4 ENSEMBL cdna:known chromosome:CEL140:V:6588193:6589965:1 gene:ZK1055.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6588192-6589965(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1055.4
Entrez Gene 191513 Entrez gene
SwissProt O76444 EMBL-EBI
WormBase CE18473 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19262 Hypothetical protein ZK1055.4 [Caenorhabditis elegans] ref|NP_504674.1| ZK1055.4 [Caenorhabditis elegans] 0.0
blast CAE71911 Hypothetical protein CBG18973 [Caenorhabditis briggsae] 0.0
blast CAE71911 Hypothetical protein CBG18973 [Caenorhabditis briggsae] 1.0E-175
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504674.1 1 21-38
ZK1055.4 1 21-38
SNAP00000018288 1 21-38
GENEFINDER00000018299 1 12-29
Sequence
Target Sequence 
>C. ELEGANS:185970_AT
gatcatggcaggctcttatttggcgatgaatacgccgtacgcaattaagtttttgcacga
ttttgcaaattatgagaatactttaccggatagctttcatggaacggataatggagcact
tcactttttcattgccgagcgttacttccctgaagaaatgtacactatcgacctttgccg
taaaccatacaaatattcaagagatttcaatgatgtgttcacttatgaagcatgccttcg
tggaatcctcggagctagaactgaattcgatcgcgtgaaaattctgaaaaagggcacggg
atgggctcgtgatagttggataaccgatggagtttggaataaagaaattggagatttcat
gctacattcatggaagacaagccaactacaaacaattccaaaccggaaaattcgaccaaa
aaagacatcaatgtacgaatggttcaacccacttatcggtgcaattcatctcgacaaatg
ccatccgaagaacatgtcatggaattacgatgaacgattgttaggcgactctgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATGGCAGGCTCTTATTTGGCG 494 419 582 Antisense
GAATACGCCGTACGCAATTAAGTTT 366 327 609 Antisense
AATACTTTACCGGATAGCTTTCATG 302 171 658 Antisense
GCACTTCACTTTTTCATTGCCGAGC 211 315 697 Antisense
GAAATGTACACTATCGACCTTTGCC 270 361 736 Antisense
TCGACCTTTGCCGTAAACCATACAA 578 601 749 Antisense
TGAAGCATGCCTTCGTGGAATCCTC 548 573 807 Antisense
GGGATGGGCTCGTGATAGTTGGATA 684 495 879 Antisense
GGTTCAACCCACTTATCGGTGCAAT 21 505 1022 Antisense
AATTCATCTCGACAAATGCCATCCG 532 175 1044 Antisense
GAACGATTGTTAGGCGACTCTGAGG 644 347 1093 Antisense
Sequence Source Affymetrix Proprietary Database