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[185967_at]

Description C49D10.4 /REP_DB=WormBase Gene ID /WP=CE08845 /TR=O16606 /GB=AAC71179.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 9.9
(0.4)
A 		3.9
(-2.9)
A 		3.8
(-3)
A 		14.7
(3)
A 		11
B 10
(1.3)
A 		5.2
(-2.2)
A 		4.1
(-3)
A 		12.4
(3)
A 		8
C 29.8
(-1.4)
A 		13
(-3)
A 		13.2
(-3)
A 		77.3
(3)
A 		64
avr 16.6
(-0.9) 		7.4
(-2.9) 		7
(-3) 		34.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 9.8
(-1.1)
A 		8.1
(-1.6)
A 		25.1
(3)
A 		2.7
(-3)
A 		12.8
(-0.3)
A 		7.3
(-1.8)
A 		22
B 5.8
(-3)
A 		8.8
(-2.5)
A 		8.2
(-2.6)
A 		41.8
(3)
A 		22.9
(-0.2)
A 		7.1
(-2.8)
A 		36
C 30.9
(1.3)
A 		28.1
(0.7)
A 		10.7
(-3)
A 		12.6
(-2.6)
A 		38.8
(3)
A 		31.3
(1.4)
A 		28
avr 15.5
(-2.5) 		15
(-2.8) 		14.7
(-3) 		19
(-0.4) 		24.8
(3) 		15.2
(-2.7) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.6
(3)
A 		0.8
(-3)
A 		1
(-2.6)
A 		2.2
(0)
A 		3
B 3.2
(3)
A 		1.3
(-2)
A 		0.9
(-3)
A 		2.7
(1.7)
A 		2
C 9.9
(1)
A 		3.7
(-3)
A 		4.6
(-2.4)
A 		13
(3)
A 		9
avr 5.6
(2.4) 		1.9
(-3) 		2.2
(-2.6) 		6
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-1.6)
A 		2.9
(-0.3)
A 		5.5
(3)
A 		0.7
(-3)
A 		3.9
(1)
A 		1.8
(-1.6)
A 		5
B 2
(-3)
A 		2.9
(-2.4)
A 		2
(-3)
A 		11.1
(3)
A 		9.3
(1.8)
A 		2.7
(-2.5)
A 		9
C 11.5
(2.4)
A 		8.6
(0.7)
A 		2.7
(-2.9)
A 		2.5
(-3)
A 		12.5
(3)
A 		10.5
(1.8)
A 		10
avr 5.1
(-1) 		4.8
(-1.4) 		3.4
(-3) 		4.8
(-1.4) 		8.6
(3) 		5
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5049
Sequence Type Exemplar sequence
Representative Public ID C49D10.4 NCBI
Target Description C49D10.4 /REP_DB=WormBase Gene ID /WP=CE08845 /TR=O16606 /GB=AAC71179.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062277 NCBI Caenorhabditis elegans C49D10.4 (C49D10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000008453 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3869894:3873003:1 11/11 None
C49D10.4 ENSEMBL cdna:known chromosome:CEL140:II:3872125:3873003:1 gene:C49D10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3872123-3873002(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49D10.4
Entrez Gene 183607 Entrez gene
SwissProt O16606 EMBL-EBI
WormBase CE08845 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17771 Hypothetical protein C43F9.10 [Caenorhabditis elegans] ref|NP_001023061.1| C43F9.10 [Caenorhabditis elegans] 0.0
blast CAE60736 Hypothetical protein CBG04420 [Caenorhabditis briggsae] 0.0
blast AAC71179 Hypothetical protein C49D10.4 [Caenorhabditis elegans] ref|NP_494678.1| C49D10.4 [Caenorhabditis elegans] 1.0E-109
blast AAC71179 Hypothetical protein C49D10.4 [Caenorhabditis elegans] ref|NP_494678.1| C49D10.4 [Caenorhabditis elegans] 1.0E-108
blast CAE17771 Hypothetical protein C43F9.10 [Caenorhabditis elegans] ref|NP_001023061.1| C43F9.10 [Caenorhabditis elegans] 3.0E-71
blast CAE60736 Hypothetical protein CBG04420 [Caenorhabditis briggsae] 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 9.2E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008453 10 31-50,70-89,133-155,162-181,185-207,245-267,298-320,327-346,361-383,456-475
Sequence
Target Sequence 
>C. ELEGANS:185967_AT
gtttagcagcgaatctaggctcacttgtttattcgacgttcaaaaaccatgccaagtcaa
tgttcaagtacagtaattcattttgtgaagttttgaccattgccaatgaggatctatgtc
gtaaatcgattaaagcatacgaggatgaagtttcaaaaaaacagccggatgtattattta
ttattgataagcactctaaattgttaagcccactgacgattcctattgaaaatgatcaaa
ttttcaaagaagccttggcaaccctgaagaaatatgaaaaaattgtgaaaaaaaagattt
atatggtagtatcttatgtgcccccactggactataaactaacgaaacttgcaaactatt
tggatgatgggaaaaatgtcacccaaaatgtttttactactaatttcatttatctcaatg
gactgaaaagacagggagaactcgtgaaaagatgctcaaaatgccaactcatttatattt
cggatgtcttatacaatggaaacaaaacaaaaaattttgatgatacaaccaaacttgggt
attacttcgatggatttcatattactccatttgctcgtaacctcattaaacctgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTAGCAGCGAATCTAGGCTCACT 606 449 38 Antisense
TAGGCTCACTTGTTTATTCGACGTT 345 655 53 Antisense
GTGAAGTTTTGACCATTGCCAATGA 138 481 122 Antisense
GCACTCTAAATTGTTAAGCCCACTG 71 315 228 Antisense
GCCCACTGACGATTCCTATTGAAAA 553 285 245 Antisense
GAAGCCTTGGCAACCCTGAAGAAAT 229 345 286 Antisense
ATGGTAGTATCTTATGTGCCCCCAC 160 51 340 Antisense
TGTGCCCCCACTGGACTATAAACTA 162 557 354 Antisense
ATGCCAACTCATTTATATTTCGGAT 307 41 498 Antisense
GATTTCATATTACTCCATTTGCTCG 18 429 590 Antisense
GCTCGTAACCTCATTAAACCTGTGT 509 289 610 Antisense
Sequence Source Affymetrix Proprietary Database