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[185966_at] 7TM chemoreceptor, srw family

Description Y32B12C.2 /REP_DB=WormBase Gene ID /WP=CE19068 /TR=Q9XX07 /GB=CAA21035.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 6.9
(-2.5)
A 		26.5
(0.3)
A 		3.7
(-3)
A 		45.4
(3)
A 		42
B 38.2
(0.8)
A 		9.7
(-2.3)
A 		3.3
(-3)
A 		58.1
(3)
P 		55
C 19.6
(-2.1)
A 		22.4
(-1.9)
A 		3.2
(-3)
A 		109.5
(3)
P 		106
avr 21.6
(-1.4) 		19.5
(-1.6) 		3.4
(-3) 		71
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 15.9
(-1.1)
A 		29.8
(1)
A 		9.9
(-1.9)
A 		2.6
(-3)
A 		43.8
(3)
A 		4.6
(-2.7)
A 		41
B 6.1
(-2.8)
A 		9.6
(-2)
A 		30.2
(3)
A 		22.1
(1)
A 		5.4
(-3)
A 		19
(0.3)
A 		25
C 17.2
(-1.8)
A 		74.2
(3)
M 		37.7
(-0.1)
A 		3.6
(-3)
A 		6
(-2.8)
A 		9.8
(-2.5)
A 		71
avr 13.1
(-2.2) 		37.9
(3) 		25.9
(0.5) 		9.4
(-3) 		18.4
(-1.1) 		11.1
(-2.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.5
(-1.4)
A 		5.7
(2)
A 		1
(-3)
A 		6.6
(3)
A 		6
B 12.2
(2.9)
A 		2.4
(-2.2)
A 		0.8
(-3)
A 		12.4
(3)
P 		12
C 6.5
(-1.1)
A 		6.4
(-1.2)
A 		1.1
(-3)
A 		18.5
(3)
P 		17
avr 7.1
(0.2) 		4.8
(-1) 		1
(-3) 		12.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.9
(-1.9)
A 		10.6
(1.8)
A 		2.2
(-2.3)
A 		0.7
(-3)
A 		13.2
(3)
A 		1.1
(-2.8)
A 		13
B 2.1
(-3)
A 		3.2
(-1.7)
A 		7.3
(3)
A 		5.9
(1.4)
A 		2.2
(-2.9)
A 		7.1
(2.8)
A 		5
C 6.4
(-1.4)
A 		22.6
(3)
M 		9.6
(-0.6)
A 		0.7
(-3)
A 		1.9
(-2.7)
A 		3.3
(-2.3)
A 		22
avr 3.8
(-2.1) 		12.1
(3) 		6.4
(-0.5) 		2.4
(-3) 		5.8
(-0.9) 		3.8
(-2.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14001
Sequence Type Exemplar sequence
Representative Public ID Y32B12C.2 NCBI
Target Description Y32B12C.2 /REP_DB=WormBase Gene ID /WP=CE19068 /TR=Q9XX07 /GB=CAA21035.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074801(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074801 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-54) (srw-54) mRNA, complete cds. 11/11 None
Y32B12C.2 ENSEMBL cdna:known chromosome:CEL140:V:16613917:16615285:1 gene:Y32B12C.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020484 4/11 Cross Hyb Matching Probes None
SNAP00000038331 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16613916-16615285(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-54
Ensembl Y32B12C.2
Entrez Gene 189573 Entrez gene
SwissProt Q9XX07 EMBL-EBI
WormBase CE19068 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21035 Hypothetical protein Y32B12C.2 [Caenorhabditis elegans] ref|NP_507202.1| Serpentine Receptor, class W family member (srw-54) [Caenorhabditis elegans] 0.0
blast CAB04370 Hypothetical protein F40D4.8 [Caenorhabditis elegans] ref|NP_507344.1| Serpentine Receptor, class W family member (srw-51) [Caenorhabditis elegans] 1.0E-51
blast CAA18357 Hypothetical protein H24D24.1 [Caenorhabditis elegans] ref|NP_506996.1| Serpentine Receptor, class W family member (srw-59) [Caenorhabditis elegans] 2.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 2.3E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507202.1 6 39-58,68-90,158-180,215-237,260-282,302-321
Y32B12C.2 6 39-58,68-90,158-180,215-237,260-282,302-321
Sequence
Target Sequence 
>C. ELEGANS:185966_AT
gtggtattacaattccattctgggcacttgatttttctcaaacacaagtcaccgtggagt
ctgacccctggagattgccagacgactgtaaacattttgctgaaggtcgattttattttt
caactaccacttctctacaaaatcagggatttgtactacttattcaaggaatcttattca
aactgattctttctttagttcttccgatagcaacattaattttgattcatgacattaaaa
tgaggaataaggtgtcatccgtgggaagtagtgcttcaaacgatcgttcaacaaatttgg
ttgtttttatgacaatttcatttatcattgcacttgccccacagggagtactatacctta
tcaaatttacatataaaaatgatgaaggagttgtaagtactattgaaacacttaacaatt
ttcatgcgtttgtaccacttgccaacggaactattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTATTACAATTCCATTCTGGGC 661 489 497 Antisense
CATTCTGGGCACTTGATTTTTCTCA 342 217 512 Antisense
CACAAGTCACCGTGGAGTCTGACCC 257 193 539 Antisense
AGTCTGACCCCTGGAGATTGCCAGA 646 59 554 Antisense
TCGATTTTATTTTTCAACTACCACT 270 603 603 Antisense
GATTCTTTCTTTAGTTCTTCCGATA 672 429 681 Antisense
AAGTAGTGCTTCAAACGATCGTTCA 576 157 762 Antisense
TTTCATTTATCATTGCACTTGCCCC 210 673 812 Antisense
TGCACTTGCCCCACAGGGAGTACTA 595 575 825 Antisense
TTTCATGCGTTTGTACCACTTGCCA 270 673 916 Antisense
GTACCACTTGCCAACGGAACTATTC 76 457 928 Antisense
Sequence Source Affymetrix Proprietary Database