[Home] | [Total List]

[185965_at]

Description Y106G6A.5 /REP_DB=WormBase Gene ID /WP=CE19298 /TR=Q9XWQ1 /GB=CAA21598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 28      4grp_high_8_8 > 0      6grp_highest_nonorm > 72      6grp_total > 85      4grp_total > 07      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 353
(1.6)
P 		195.4
(-3)
P 		401.3
(3)
P 		324.6
(0.8)
P 		206
B 367.6
(2.4)
P 		189.6
(-3)
P 		388.9
(3)
P 		350.3
(1.8)
P 		199
C 293.3
(-1.7)
P 		263.9
(-3)
P 		346.2
(0.6)
P 		399.5
(3)
P 		136
avr 338
(1.5) 		216.3
(-3) 		378.8
(3) 		358.1
(2.2) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 324.2
(-3)
P 		384.4
(-0.9)
P 		447.9
(1.3)
P 		497.7
(3)
P 		445.4
(1.2)
P 		417
(0.2)
P 		174
B 326.4
(-3)
P 		404.4
(0.3)
P 		352.5
(-1.9)
P 		380.4
(-0.7)
P 		461.4
(2.7)
P 		468.2
(3)
P 		142
C 344.4
(-3)
P 		405.6
(-1.3)
P 		405.1
(-1.3)
P 		464.9
(0.3)
P 		441.6
(-0.3)
P 		564.3
(3)
P 		220
avr 331.7
(-3) 		398.1
(-0.4) 		401.8
(-0.2) 		447.7
(1.6) 		449.5
(1.7) 		483.2
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 128.5
(3)
P 		42.4
(-3)
P 		104.9
(1.4)
P 		47.5
(-2.6)
P 		86
B 117.2
(3)
P 		46.8
(-3)
P 		90.1
(0.7)
P 		74.6
(-0.6)
P 		70
C 97.1
(0.3)
P 		75.9
(-2)
P 		120.7
(3)
P 		67.4
(-3)
P 		53
avr 114.3
(3) 		55
(-3) 		105.2
(2.1) 		63.2
(-2.2) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 59.8
(-3)
P 		136.7
(3)
P 		97.6
(-0.1)
P 		126.2
(2.2)
P 		134.4
(2.8)
P 		101.5
(0.3)
P 		77
B 113.6
(-1.4)
P 		134.6
(-0.1)
P 		85.6
(-3)
P 		100.7
(-2.1)
P 		187.5
(3)
P 		174.6
(2.2)
P 		102
C 127.6
(-0.9)
P 		123.8
(-1.1)
P 		103.1
(-2.4)
P 		93.5
(-3)
P 		142.9
(0.1)
P 		188.9
(3)
P 		95
avr 100.3
(-2.5) 		131.7
(0.7) 		95.4
(-3) 		106.8
(-1.9) 		154.9
(3) 		155
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2419
Sequence Type Exemplar sequence
Representative Public ID Y106G6A.5 NCBI
Target Description Y106G6A.5 /REP_DB=WormBase Gene ID /WP=CE19298 /TR=Q9XWQ1 /GB=CAA21598.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060227 NCBI Caenorhabditis elegans Y106G6A.5 (Y106G6A.5) mRNA, complete cds. 11/11 None
SNAP00000021907 ENSEMBL cdna:SNAP chromosome:CEL140:I:9943019:9944135:-1 11/11 None
GENEFINDER00000021909 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9943019:9944135:-1 11/11 None
Y106G6A.5 ENSEMBL cdna:known chromosome:CEL140:I:9943006:9944135:-1 gene:Y106G6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9942949-9944066(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6A.5
Entrez Gene 172849 Entrez gene
SwissProt Q9XWQ1 EMBL-EBI
WormBase CE19298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21598 Hypothetical protein Y106G6A.5 [Caenorhabditis elegans] ref|NP_492628.1| Y106G6A.5 [Caenorhabditis elegans] 1.0E-111
blast CAA21598 Hypothetical protein Y106G6A.5 [Caenorhabditis elegans] ref|NP_492628.1| Y106G6A.5 [Caenorhabditis elegans] 1.0E-108
blast CAE60256 Hypothetical protein CBG03831 [Caenorhabditis briggsae] 1.0E-103
blast CAE60256 Hypothetical protein CBG03831 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:185965_AT
gtttcggcgaacattgttgctcaacaaaaagtgtctaccgaatccgtcaatgaaattttg
aacacatcagctggaaatgagttgcttcaaaattttcaaaatcttatcaccgaagtagag
gaaaatggagccgaagggggtcgtttagcgaatctttgtagtactcgaatgggaagatgc
cagcaaatgtgtaaagaaaaggccgatgcggttatggaaattgatgagttcctccgaaat
tctgtagaatttgacaagaagattcgagaaatcaacgctcaaatttcgaaactcacgcgt
ttctgcaaccaaactgaacaggcgatgacgtatttggaagctctgtgcgaagttgctcat
actgaaggagaagttgatttaatccgacaacaagccaaatcagcagctactattgtgcaa
atcgagtgtgaatctcccagcgttttgacttctgcactccgttctcgtcctgaagatgcc
gttaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCGGCGAACATTGTTGCTCAAC 104 451 97 Antisense
AAGTGTCTACCGAATCCGTCAATGA 82 159 125 Antisense
TGGAGCCGAAGGGGGTCGTTTAGCG 545 545 222 Antisense
GATGAGTTCCTCCGAAATTCTGTAG 511 409 319 Antisense
GCTCAAATTTCGAAACTCACGCGTT 606 301 373 Antisense
TCACGCGTTTCTGCAACCAAACTGA 256 625 389 Antisense
GATGACGTATTTGGAAGCTCTGTGC 545 411 420 Antisense
GCTCTGTGCGAAGTTGCTCATACTG 23 301 436 Antisense
GCCAAATCAGCAGCTACTATTGTGC 62 279 490 Antisense
AATCGAGTGTGAATCTCCCAGCGTT 136 169 516 Antisense
TTCTCGTCCTGAAGATGCCGTTAAG 669 689 558 Antisense
Sequence Source Affymetrix Proprietary Database