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[185964_at]

Description Y37D8A.19 /REP_DB=WormBase Gene ID /WP=CE20223 /TR=Q9XWU9 /GB=CAA21542.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 3.6
(-3)
A 		22
(-1.4)
A 		9.2
(-2.5)
A 		72.2
(3)
A 		69
B 27.3
(3)
A 		5.2
(-3)
A 		5.5
(-2.9)
A 		8.9
(-2)
A 		22
C 10.1
(-2.4)
A 		5.2
(-2.8)
A 		3.4
(-3)
A 		73
(3)
A 		70
avr 13.7
(-2) 		10.8
(-2.4) 		6
(-3) 		51.4
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1372
1 2 3 4 5 6 range
A 4.8
(-3)
A 		3.2
(-3)
A 		8.8
(-3)
A 		29.2
(-2.9)
A 		1049
(3)
P 		731.7
(1.2)
P 		1046
B 12.7
(-3)
A 		29.7
(-2.9)
A 		8.1
(-3)
A 		5
(-3)
A 		1375.2
(3)
P 		713.7
(0.1)
P 		1370
C 4.1
(-3)
A 		8.2
(-3)
A 		5
(-3)
A 		10.6
(-3)
A 		1243.6
(3)
P 		726.9
(0.5)
P 		1240
avr 7.2
(-3) 		13.7
(-3) 		7.3
(-3) 		14.9
(-3) 		1222.6
(3) 		724.1
(0.5) 		1215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.3
(-3)
A 		4.8
(-0.7)
A 		2.4
(-2.3)
A 		10.6
(3)
A 		9
B 8.7
(3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		1.9
(-2.5)
A 		7
C 3.3
(-1.9)
A 		1.5
(-2.8)
A 		1.2
(-3)
A 		12.3
(3)
A 		11
avr 4.4
(-0.5) 		2.5
(-2.2) 		1.6
(-3) 		8.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.1
(-3)
A 		1.9
(-3)
A 		7.4
(-2.9)
A 		316.5
(3)
P 		178.2
(0.4)
P 		316
B 4.4
(-3)
A 		9.9
(-2.9)
A 		2
(-3)
A 		1.3
(-3)
A 		558.7
(3)
P 		266.1
(-0.1)
P 		557
C 1.5
(-3)
A 		2.5
(-3)
A 		1.3
(-3)
A 		2.1
(-3)
A 		402.4
(3)
P 		243.3
(0.6)
P 		401
avr 2.3
(-3) 		4.5
(-3) 		1.7
(-3) 		3.6
(-3) 		425.9
(3) 		229.2
(0.2) 		424
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7620
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.19 NCBI
Target Description Y37D8A.19 /REP_DB=WormBase Gene ID /WP=CE20223 /TR=Q9XWU9 /GB=CAA21542.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067286 NCBI Caenorhabditis elegans Y37D8A.19 (Y37D8A.19) mRNA, complete cds. 11/11 None
Y37D8A.19.1 ENSEMBL cdna:known chromosome:CEL140:III:12929403:12964684:1 gene:Y37D8A.19 11/11 None
Y37D8A.19.2 ENSEMBL cdna:known chromosome:CEL140:III:12929403:12930952:1 gene:Y37D8A.19 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028785 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028805 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12929403-12930899(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.19
Entrez Gene 176711 Entrez gene
SwissProt Q9XWU9 EMBL-EBI
WormBase CE20223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21542 Hypothetical protein Y37D8A.19 [Caenorhabditis elegans] ref|NP_499687.1| Y37D8A.19 [Caenorhabditis elegans] 3.0E-54
blast CAE69546 Hypothetical protein CBG15758 [Caenorhabditis briggsae] 3.0E-24
blast CAA88974 Hypothetical protein ZC373.2 [Caenorhabditis elegans] ref|NP_509687.1| ZC373.2 [Caenorhabditis elegans] 1.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185964_AT
tgaagcttcttatcgtatttttcgctgtaatttctgtggctgcggggcagagcatcatct
ggaacaataacaatgctaacagattcccaagttgctttgcctgctccactgccgccggct
tcgtcgccaacattgacggccagtctacaaatgctcggtgcactgacgctgcttcaaatc
cagccgaacgatgcccaggatgttgtgcatccgttgctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTTCTTATCGTATTTTTCGC 64 573 14 Antisense
ATCGTATTTTTCGCTGTAATTTCTG 198 35 25 Antisense
GTAATTTCTGTGGCTGCGGGGCAGA 387 463 40 Antisense
GCGGGGCAGAGCATCATCTGGAACA 204 293 55 Antisense
AACAGATTCCCAAGTTGCTTTGCCT 480 137 91 Antisense
CTTCGTCGCCAACATTGACGGCCAG 563 219 132 Antisense
TTGACGGCCAGTCTACAAATGCTCG 531 685 146 Antisense
ACAAATGCTCGGTGCACTGACGCTG 687 109 160 Antisense
TGCACTGACGCTGCTTCAAATCCAG 549 577 172 Antisense
AGCCGAACGATGCCCAGGATGTTGT 217 83 195 Antisense
AGGATGTTGTGCATCCGTTGCTCTT 200 57 210 Antisense
Sequence Source Affymetrix Proprietary Database