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[185963_at]

Description Y46D2A.1 /REP_DB=WormBase Gene ID /WP=CE25299 /TR=Q9N4X0 /GB=AAF60609.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 115.6
(3)
P 		106
(1.2)
P 		84.1
(-3)
M 		113.6
(2.6)
P 		32
B 156.7
(3)
P 		77.1
(-3)
A 		80
(-2.8)
A 		91.9
(-1.9)
P 		80
C 103.2
(2.6)
P 		81.3
(-3)
A 		81.6
(-2.9)
M 		104.6
(3)
P 		23
avr 125.2
(3) 		88.1
(-2.1) 		81.9
(-3) 		103.4
(-0) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 130.5
(3)
A 		68.8
(-3)
P 		104.6
(0.5)
P 		81.2
(-1.8)
A 		102
(0.2)
M 		72
(-2.7)
A 		62
B 103.1
(1.5)
P 		112.7
(3)
P 		87.1
(-0.9)
A 		82.4
(-1.6)
P 		78.1
(-2.3)
A 		73.3
(-3)
A 		39
C 93.2
(-0.7)
M 		104.6
(0.2)
P 		65
(-3)
A 		140.2
(3)
A 		75.2
(-2.2)
A 		69.3
(-2.7)
A 		75
avr 108.9
(3) 		95.4
(0.8) 		85.6
(-0.7) 		101.3
(1.8) 		85.1
(-0.8) 		71.5
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 42.1
(3)
P 		23
(-1.5)
P 		22
(-1.7)
M 		16.6
(-3)
P 		26
B 50
(3)
P 		19
(-2.9)
A 		18.5
(-3)
A 		19.6
(-2.8)
P 		32
C 34.2
(3)
P 		23.4
(-0.9)
A 		28.5
(0.9)
M 		17.6
(-3)
P 		17
avr 42.1
(3) 		21.8
(-2) 		23
(-1.7) 		17.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 24.1
(-0)
A 		24.5
(0.2)
P 		22.8
(-0.6)
P 		20.6
(-1.6)
A 		30.8
(3)
M 		17.5
(-3)
A 		13
B 35.9
(2.4)
P 		37.5
(3)
P 		21.1
(-3)
A 		21.8
(-2.7)
P 		31.7
(0.9)
A 		27.3
(-0.7)
A 		16
C 34.6
(3)
M 		31.9
(2.1)
P 		16.6
(-3)
A 		28.2
(0.9)
A 		24.3
(-0.4)
A 		23.2
(-0.8)
A 		18
avr 31.5
(3) 		31.3
(2.9) 		20.2
(-3) 		23.5
(-1.2) 		28.9
(1.6) 		22.7
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5556
Sequence Type Exemplar sequence
Representative Public ID Y46D2A.1 NCBI
Target Description Y46D2A.1 /REP_DB=WormBase Gene ID /WP=CE25299 /TR=Q9N4X0 /GB=AAF60609.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062105 NCBI Caenorhabditis elegans Y46D2A.1 (Y46D2A.1) mRNA, complete cds. 11/11 None
SNAP00000014492 ENSEMBL cdna:SNAP chromosome:CEL140:II:3324463:3326386:1 11/11 None
GENEFINDER00000014495 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3323988:3326386:1 11/11 None
Y46D2A.1 ENSEMBL cdna:known chromosome:CEL140:II:3324016:3326386:1 gene:Y46D2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3323986-3326385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46D2A.1
Entrez Gene 189951 Entrez gene
SwissProt Q9N4X0 EMBL-EBI
WormBase CE36035 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494506 Y46D2A.1 [Caenorhabditis elegans] gb|AAF60609.2| Hypothetical protein Y46D2A.1 [Caenorhabditis elegans] 1.0E-161
blast CAE64220 Hypothetical protein CBG08853 [Caenorhabditis briggsae] 4.0E-65
blast AAB70366 Hypothetical protein F39E9.1 [Caenorhabditis elegans] ref|NP_494504.2| F39E9.1 [Caenorhabditis elegans] 6.0E-60
blast CAE64220 Hypothetical protein CBG08853 [Caenorhabditis briggsae] 3.0E-57
blast NP_494505 Y46D2A.2 [Caenorhabditis elegans] gb|AAF60610.3| Hypothetical protein Y46D2A.2 [Caenorhabditis elegans] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185963_AT
ttgagccacttcaaatcggcgtgaagtactggtatttcacggctagtaagccagtgagca
tgacaatggagagcaagtacgttagcaatctgatgtacactgcaacttcagtcaacacta
cgggacttatcgtcaacgattttgtattcctggagcatgttgtcaatttcccgttggatt
tgacacgtgttagaactatcggaacattgatctccgcattccctgaatcaagcacaataa
attttgtttacaaagatgatcaatcatcatctaggcaaagcttcagcacagaacaaaccc
attctctatttgatacttatatgcaagcatcatcattaaccatcaatgccaccgcattaa
tacctggaagatttttctgtcaatattttggagtcacaggagatctactgcccccaggga
cttctacaccttcaacgccttctacagttgaaacaacgatgcctagtaccactcgaattt
ctacaactccaagtgctgctcctcatgaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGCCACTTCAAATCGGCGTGAA 348 705 638 Antisense
CTGCAACTTCAGTCAACACTACGGG 599 237 737 Antisense
GCATGTTGTCAATTTCCCGTTGGAT 542 309 792 Antisense
ATCGGAACATTGATCTCCGCATTCC 407 35 835 Antisense
TCCGCATTCCCTGAATCAAGCACAA 439 595 850 Antisense
AAACCCATTCTCTATTTGATACTTA 241 127 932 Antisense
AATGCCACCGCATTAATACCTGGAA 105 167 982 Antisense
CACCTTCAACGCCTTCTACAGTTGA 396 201 1064 Antisense
GAAACAACGATGCCTAGTACCACTC 561 355 1087 Antisense
GTACCACTCGAATTTCTACAACTCC 345 457 1103 Antisense
TCCAAGTGCTGCTCCTCATGAATTT 311 587 1125 Antisense
Sequence Source Affymetrix Proprietary Database