[Home] | [Total List]

[185962_at]

Description H24O09.1 /REP_DB=WormBase Gene ID /WP=CE23824 /TR=Q9N5K7 /GB=AAF39902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 29      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 72.6
(3)
P 		14.2
(-2.3)
A 		6.6
(-3)
A 		70.3
(2.8)
A 		66
B 87
(3)
P 		51.6
(0.4)
A 		5.7
(-3)
A 		32.7
(-1)
A 		81
C 16
(-2.3)
A 		25.5
(-1.5)
A 		8.2
(-3)
A 		78.1
(3)
A 		70
avr 58.5
(2.8) 		30.4
(-0.4) 		6.8
(-3) 		60.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.2
(-0)
A 		5.2
(-1.5)
A 		7.6
(-0.3)
A 		2
(-3)
A 		7.7
(-0.3)
A 		14.6
(3)
A 		13
B 45.4
(3)
A 		37
(1.8)
A 		2.7
(-3)
A 		2.5
(-3)
A 		5.3
(-2.6)
A 		17.5
(-0.9)
A 		43
C 32.9
(3)
A 		26.3
(1.7)
A 		5.5
(-2.6)
A 		20.6
(0.5)
A 		3.4
(-3)
A 		4
(-2.9)
A 		30
avr 28.8
(3) 		22.8
(1.5) 		5.3
(-3) 		8.4
(-2.2) 		5.5
(-2.9) 		12
(-1.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.4
(3)
P 		3.1
(-2.7)
A 		1.7
(-3)
A 		10.3
(-0.9)
A 		25
B 27.7
(3)
P 		12.7
(-0.4)
A 		1.3
(-3)
A 		7
(-1.7)
A 		26
C 5.3
(-1.6)
A 		7.3
(-0.4)
A 		2.8
(-3)
A 		13.2
(3)
A 		10
avr 19.8
(3) 		7.7
(-1.1) 		1.9
(-3) 		10.2
(-0.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.5
(-1)
A 		1.9
(-0.2)
A 		1.6
(-0.8)
A 		0.5
(-3)
A 		2.3
(0.6)
A 		3.5
(3)
A 		3
B 15.8
(3)
A 		12.3
(1.6)
A 		0.6
(-3)
A 		0.7
(-3)
A 		2.2
(-2.4)
A 		6.5
(-0.7)
A 		15
C 12.2
(3)
A 		8
(0.7)
A 		1.4
(-2.8)
A 		4.2
(-1.3)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		11
avr 9.8
(3) 		7.4
(1.3) 		1.2
(-3) 		1.8
(-2.6) 		1.9
(-2.5) 		3.8
(-1.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15343
Sequence Type Exemplar sequence
Representative Public ID H24O09.1 NCBI
Target Description H24O09.1 /REP_DB=WormBase Gene ID /WP=CE23824 /TR=Q9N5K7 /GB=AAF39902.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070903(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070903 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-40) (srbc-40) mRNA, complete cds. 10/11 None
H24O09.1 ENSEMBL cdna:known chromosome:CEL140:V:715663:719661:-1 gene:H24O09.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012485 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012488 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:715662-719661(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-40
Ensembl H24O09.1
Entrez Gene 186776 Entrez gene
SwissProt Q9N5K7 EMBL-EBI
WormBase CE35332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39902 Serpentine receptor, class bc (class b-like) protein 40 [Caenorhabditis elegans] ref|NP_503304.2| Serpentine Receptor, class BC (class B-like) family member (srbc-40) [Caenorhabditis elegans] 1.0E-174
blast CAE62277 Hypothetical protein CBG06336 [Caenorhabditis briggsae] 1.0E-140
blast CAE62501 Hypothetical protein CBG06606 [Caenorhabditis briggsae] 2.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-61
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503304.2 6 5-27,48-70,80-102,122-144,175-197,210-232
H24O09.1 6 5-27,48-70,80-102,122-144,175-197,210-232
Sequence
Target Sequence 
>C. ELEGANS:185962_AT
gttcttacattctacgtgtttccagaatttttcgagtcaactagacttttggtgctatgg
ttcggactgctcacttcgaacttacagatggctcgaatgatgtatcaattttttatcagt
tgtgatagagttatggcggccttcttcccgatcgaataccgaatctaccacccaataatc
ccaatttggccatttttcctcttctcactttcgactggtctctttcaagatttcgtgttt
ttctactgttgtgattttgagatttacgttccgaaaaattgtttagcgttgggatgtgta
atgaataagtgttacaagactttctggtcaacttatcaaacagcaaaccgattagccata
cttgatgccgtagtcacatttttctgtcaatttattcctccgttttgtgtgagcatttgg
ccggaatttgagctgttcaaattttcatacgccgggccttttaatcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTACATTCTACGTGTTTCCAG 163 443 202 Antisense
TTGGTGCTATGGTTCGGACTGCTCA 327 705 250 Antisense
GGACTGCTCACTTCGAACTTACAGA 202 523 265 Antisense
ATAGAGTTATGGCGGCCTTCTTCCC 645 19 326 Antisense
GATCGAATACCGAATCTACCACCCA 51 417 351 Antisense
GATTTCGTGTTTTTCTACTGTTGTG 172 429 430 Antisense
AACAGCAAACCGATTAGCCATACTT 591 133 540 Antisense
GATGCCGTAGTCACATTTTTCTGTC 72 415 565 Antisense
TTTTCTGTCAATTTATTCCTCCGTT 511 677 581 Antisense
GAGCTGTTCAAATTTTCATACGCCG 478 387 631 Antisense
TCATACGCCGGGCCTTTTAATCTTG 326 615 646 Antisense
Sequence Source Affymetrix Proprietary Database