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[185961_at]

Description Y64G10A.2 /REP_DB=WormBase Gene ID /WP=CE22713 /TR=Q9NA66 /GB=CAB54467.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 7.4
(2.2)
A 		7.9
(3)
A 		4
(-3)
A 		7.6
(2.5)
A 		4
B 4.8
(-3)
A 		7.1
(0.2)
A 		9.1
(3)
A 		8.1
(1.6)
A 		4
C 6.1
(-2.3)
A 		9.8
(3)
A 		6
(-2.4)
A 		5.6
(-3)
A 		4
avr 6.1
(-3) 		8.3
(3) 		6.4
(-2.2) 		7.1
(-0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 8
(3)
A 		3.4
(-3)
A 		4.2
(-2)
A 		4.2
(-2)
A 		3.7
(-2.6)
A 		4
(-2.2)
A 		5
B 5.9
(1.2)
A 		7.1
(3)
A 		4.7
(-0.7)
A 		4.9
(-0.4)
A 		5.3
(0.2)
A 		3.2
(-3)
A 		4
C 4.9
(-0.1)
A 		5.8
(1.3)
A 		6.9
(3)
A 		4.9
(-0.1)
A 		3.8
(-1.8)
A 		3
(-3)
A 		4
avr 6.3
(3) 		5.4
(1.1) 		5.3
(0.9) 		4.7
(-0.3) 		4.3
(-1.1) 		3.4
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.7
(3)
A 		1.7
(-0.8)
A 		1.1
(-3)
A 		1.1
(-3)
A 		2
B 1.5
(-3)
A 		1.8
(0)
A 		2.1
(3)
A 		1.7
(-1)
A 		1
C 2
(0.5)
A 		2.8
(3)
A 		2.1
(0.8)
A 		0.9
(-3)
A 		2
avr 2.1
(3) 		2.1
(3) 		1.8
(1) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.5
(3)
A 		1.2
(-0)
A 		0.9
(-3)
A 		1.1
(-1)
A 		1.1
(-1)
A 		1
(-2)
A 		1
B 2
(1.2)
A 		2.4
(3)
A 		1.1
(-3)
A 		1.3
(-2.1)
A 		2.1
(1.6)
A 		1.2
(-2.5)
A 		1
C 1.8
(3)
A 		1.8
(3)
A 		1.8
(3)
A 		1
(-3)
A 		1.2
(-1.5)
A 		1
(-3)
A 		1
avr 1.8
(3) 		1.8
(3) 		1.3
(-1.3) 		1.1
(-3) 		1.5
(0.4) 		1.1
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9917
Sequence Type Exemplar sequence
Representative Public ID Y64G10A.2 NCBI
Target Description Y64G10A.2 /REP_DB=WormBase Gene ID /WP=CE22713 /TR=Q9NA66 /GB=CAB54467.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070332
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010760 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14242816:14244385:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070332 7/11 Cross Hyb Matching Probes None
SNAP00000010751 4/11 Cross Hyb Matching Probes None
Y64G10A.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14242821-14244391(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54467 Hypothetical protein Y64G10A.2 [Caenorhabditis elegans] ref|NP_502733.2| Y64G10A.2 [Caenorhabditis elegans] 7.0E-50
Sequence
Target Sequence 
>C. ELEGANS:185961_AT
gaggcgcctgggcaagttttactgctactattccgtgaccaacttccactgtcagcacag
atctatcaacaaacggcaacggtaactcagagcaatccagtacaactggctccaaaacag
gaaacccttctgatagtacatcgccaaatgtgccagaagctacaaatccttctggtaaat
aatcggttagaattgtcgcaaaattgtaaacaaaatacttccccgtcagaatccacaaat
ggtaattctgaacaatctagcacagttggttctggctcctccgattcgtcaccaattgtg
ccagaaactacaaatgatcctgtagaagcatcatctccatctacaaacactgtgagcaca
attttaagcgaaattttgagctcttcctatccttcggagttttcctctactgttacttcc
atgctcacaactactccaagctcatgctcgggaacgttgcgctccgctcaactggctttt
cagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCGCCTGGGCAAGTTTTACTGC 583 401 208 Antisense
GTTTTACTGCTACTATTCCGTGACC 204 449 223 Antisense
CCAACTTCCACTGTCAGCACAGATC 241 277 246 Antisense
GAAACCCTTCTGATAGTACATCGCC 615 357 328 Antisense
TTCCCCGTCAGAATCCACAAATGGT 87 699 426 Antisense
TCTAGCACAGTTGGTTCTGGCTCCT 538 613 463 Antisense
CTCCGATTCGTCACCAATTGTGCCA 251 233 486 Antisense
ATCATCTCCATCTACAAACACTGTG 681 29 537 Antisense
GAAATTTTGAGCTCTTCCTATCCTT 299 363 577 Antisense
TACTCCAAGCTCATGCTCGGGAACG 393 643 639 Antisense
TCCGCTCAACTGGCTTTTCAGCAAT 143 597 670 Antisense
Sequence Source Affymetrix Proprietary Database