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[185960_at]

Description F55E10.4 /REP_DB=WormBase Gene ID /WP=CE02784 /TR=Q20836 /GB=AAC46533.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 69.4
(-1.7)
A 		97.7
(1.4)
A 		112.3
(3)
A 		57.2
(-3)
A 		55
B 23.9
(-1.8)
A 		82
(3)
A 		80.2
(2.9)
A 		9.2
(-3)
A 		73
C 12.6
(-3)
A 		103.6
(3)
A 		96.4
(2.5)
A 		28.8
(-1.9)
A 		91
avr 35.3
(-2.7) 		94.4
(2.8) 		96.3
(3) 		31.7
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 81.3
(3)
A 		64.7
(1.7)
A 		57
(1.1)
A 		6.5
(-3)
A 		26.1
(-1.4)
A 		35.7
(-0.7)
A 		75
B 38.5
(-1.5)
A 		53.7
(3)
A 		33.5
(-3)
A 		37.6
(-1.8)
A 		42.6
(-0.3)
A 		35.4
(-2.4)
A 		20
C 45
(-0.8)
A 		71.4
(3)
P 		50.1
(-0)
A 		69.1
(2.7)
A 		38.2
(-1.7)
A 		29.4
(-3)
A 		42
avr 54.9
(1.3) 		63.3
(3) 		46.9
(-0.3) 		37.7
(-2.2) 		35.6
(-2.6) 		33.5
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 25.3
(1.8)
A 		21.2
(0.7)
A 		29.4
(3)
A 		8.4
(-3)
A 		21
B 7.6
(-1.2)
A 		20.3
(3)
A 		18.6
(2.4)
A 		2
(-3)
A 		18
C 4.2
(-3)
A 		29.8
(2.2)
A 		33.6
(3)
A 		4.9
(-2.9)
A 		29
avr 12.4
(-1) 		23.8
(2.1) 		27.2
(3) 		5.1
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 15
(0.7)
A 		23
(3)
A 		12.4
(0)
A 		1.7
(-3)
A 		7.9
(-1.3)
A 		8.7
(-1)
A 		21
B 13.4
(0.2)
A 		17.9
(3)
A 		8.1
(-3)
A 		10
(-1.8)
A 		17.3
(2.6)
A 		13.2
(0.1)
A 		10
C 16.7
(0.4)
A 		21.8
(3)
P 		12.7
(-1.6)
A 		13.9
(-1)
A 		12.4
(-1.7)
A 		9.8
(-3)
A 		12
avr 15
(0.1) 		20.9
(3) 		11.1
(-1.7) 		8.5
(-3) 		12.5
(-1.1) 		10.6
(-2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16636
Sequence Type Exemplar sequence
Representative Public ID F55E10.4 NCBI
Target Description F55E10.4 /REP_DB=WormBase Gene ID /WP=CE02784 /TR=Q20836 /GB=AAC46533.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077010 NCBI Caenorhabditis elegans F55E10.4 (F55E10.4) mRNA, complete cds. 11/11 None
SNAP00000011813 ENSEMBL cdna:SNAP chromosome:CEL140:X:8327497:8327838:-1 11/11 None
GENEFINDER00000011821 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8327497:8327838:-1 11/11 None
F55E10.4 ENSEMBL cdna:known chromosome:CEL140:X:8327497:8327838:-1 gene:F55E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8327495-8327837(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55E10.4
Entrez Gene 186313 Entrez gene
SwissProt Q20836 EMBL-EBI
WormBase CE02784 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46533 Hypothetical protein F55E10.4 [Caenorhabditis elegans] ref|NP_509411.1| F55E10.4 [Caenorhabditis elegans] 4.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509411.1 1 23-45
F55E10.4 1 23-45
SNAP00000011813 1 23-45
GENEFINDER00000011821 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:185960_AT
acaaacctcactaccgagtatccgaggaccagcatgcaggatagtcgtttgtggctcatc
tgtctagctccaagtggttggctctttgcggtcattctcatcatttatgcctttcgaaaa
aacaaacgacgcatgcaagttttcgatatctatcacctcaacgaaagcaacgatcaggcc
cgtggcaatgccgatggagcacctccacaagaacatcaagtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAACCTCACTACCGAGTATCCGA 155 111 34 Antisense
GAGTATCCGAGGACCAGCATGCAGG 695 397 49 Antisense
AGGATAGTCGTTTGTGGCTCATCTG 422 57 71 Antisense
TCATCTGTCTAGCTCCAAGTGGTTG 98 621 89 Antisense
GCTCCAAGTGGTTGGCTCTTTGCGG 496 297 100 Antisense
TCTTTGCGGTCATTCTCATCATTTA 610 615 116 Antisense
GACGCATGCAAGTTTTCGATATCTA 333 381 161 Antisense
GATATCTATCACCTCAACGAAAGCA 380 425 178 Antisense
ACGAAAGCAACGATCAGGCCCGTGG 394 91 194 Antisense
AGGCCCGTGGCAATGCCGATGGAGC 434 53 209 Antisense
GCACCTCCACAAGAACATCAAGTCC 457 315 232 Antisense
Sequence Source Affymetrix Proprietary Database