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[185958_s_at]

Description ZK546.13 /REP_DB=WormBase Gene ID /WP=CE02913 /TR=Q23523 /GB=AAA68747.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 82      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 63      6grp_total > 73      4grp_total > 53      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 821.4
(3)
P 		696.2
(0.8)
P 		638.4
(-0.2)
P 		474.1
(-3)
P 		347
B 837
(3)
P 		811.5
(2.6)
P 		760.8
(1.7)
P 		474.5
(-3)
P 		363
C 815.2
(3)
P 		805.3
(2.8)
P 		654.4
(-0.1)
P 		507.1
(-3)
P 		308
avr 824.5
(3) 		771
(2.1) 		684.5
(0.5) 		485.2
(-3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 505
(-1.2)
P 		381.2
(-3)
P 		750.5
(2.5)
P 		787.6
(3)
P 		656.8
(1.1)
P 		576
(-0.1)
P 		406
B 483.1
(-2.6)
P 		463.2
(-3)
P 		656.1
(1)
P 		750.5
(3)
P 		644.8
(0.8)
P 		604.1
(-0.1)
P 		287
C 477.8
(-2.4)
P 		424.1
(-3)
P 		631.7
(-0.7)
P 		966.2
(3)
P 		640
(-0.6)
P 		533.3
(-1.8)
P 		542
avr 488.6
(-2) 		422.8
(-3) 		679.4
(0.7) 		834.8
(3) 		647.2
(0.3) 		571.1
(-0.8) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 299.1
(3)
P 		151.1
(-0.9)
P 		166.9
(-0.5)
P 		69.4
(-3)
P 		230
B 266.9
(3)
P 		200.4
(0.6)
P 		176.3
(-0.3)
P 		101.1
(-3)
P 		166
C 269.9
(3)
P 		231.5
(1.8)
P 		228.1
(1.6)
P 		85.5
(-3)
P 		184
avr 278.6
(3) 		194.3
(0.4) 		190.4
(0.3) 		85.3
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 93.1
(-3)
P 		135.6
(-0.6)
P 		163.4
(1)
P 		199.8
(3)
P 		198.2
(2.9)
P 		140.2
(-0.4)
P 		107
B 168.1
(-2.2)
P 		154.2
(-3)
P 		159.3
(-2.7)
P 		198.8
(-0.5)
P 		262
(3)
P 		225.3
(1)
P 		108
C 177.1
(0.7)
P 		129.4
(-3)
P 		160.8
(-0.6)
P 		194.3
(2)
P 		207.1
(3)
P 		178.5
(0.8)
P 		78
avr 146.1
(-2.5) 		139.7
(-3) 		161.2
(-1.4) 		197.6
(1.2) 		222.4
(3) 		181.3
(0) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185958_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4638
Sequence Type Exemplar sequence
Representative Public ID ZK546.13 NCBI
Target Description ZK546.13 /REP_DB=WormBase Gene ID /WP=CE02913 /TR=Q23523 /GB=AAA68747.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027353(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027353 NCBI Caenorhabditis elegans ZK546.17 (ZK546.17) mRNA, complete cds. 11/11 None
SNAP00000034947 ENSEMBL cdna:SNAP chromosome:CEL140:II:4938877:4941133:-1 11/11 None
ZK546.17.1 ENSEMBL cdna:known chromosome:CEL140:II:4938593:4941135:-1 gene:ZK546.17 11/11 None
ZK546.17.2 ENSEMBL cdna:known chromosome:CEL140:II:4938877:4941136:-1 gene:ZK546.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034957 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4938874-4943925(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK546.17
Entrez Gene 3565644 Entrez gene
SwissProt Q7Z144 EMBL-EBI
WormBase CE34461 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1585086_AT similar to ZK546.17 cfa
CANINE_2:CFA.8997.1.A1_AT similar to ZK546.17 cfa
CANINE_2:CFAAFFX.7811.1.S1_AT similar to ZK546.17 cfa
CANINE_2:CFAAFFX.7811.1.S1_S_AT similar to ZK546.17 cfa
CHICKEN:GGAAFFX.6446.1.S1_S_AT similar to RIKEN cDNA 1810037K07 gga
HG-U133_PLUS_2:211774_S_AT DKFZp564I122 protein hs
HG-U133A:211774_S_AT DKFZp564I122 protein hs
HG-U133A_2:211774_S_AT DKFZp564I122 protein hs
HU35KSUBA:RC_AA620830_AT DKFZp564I122 protein hs
U133_X3P:G13543966_3P_S_AT DKFZp564I122 protein hs
HG-U95AV2:37832_AT DKFZp564I122 protein hs
MOUSE430_2:1418915_AT RIKEN cDNA 1810037K07 gene mm
MOUSE430A_2:1418915_AT RIKEN cDNA 1810037K07 gene mm
MOE430A:1418915_AT RIKEN cDNA 1810037K07 gene mm
MU19KSUBA:TC24992_AT RIKEN cDNA 1810037K07 gene (1810037K07Rik), mRNA mm
MU19KSUBA:TC24992_G_AT RIKEN cDNA 1810037K07 gene (1810037K07Rik), mRNA mm
RAE230A:1376214_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
RAT230_2:1376214_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
RG-U34B:RC_AA850788_AT Similar to RIKEN cDNA 1810037K07 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAP68926 Hypothetical protein ZK546.17 [Caenorhabditis elegans] ref|NP_001022524.1| ZK546.17 [Caenorhabditis elegans] 1.0E-160
blast CAE59006 Hypothetical protein CBG02282 [Caenorhabditis briggsae] 1.0E-129
blast CAG31572 hypothetical protein [Gallus gallus] ref|NP_001026452.1| hypothetical protein LOC424597 [Gallus gallus] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:185958_S_AT
gatggtctcatctccaattcagagctttttggaggatcgtcttgaaattatgagcgagaa
actgcgaaaagtcgaggaaaactttgaaattttgcacgattactcgatgactccacaacg
aagaccgaaaattctgatgcaaacatgcgggcatgttgctggagcagctttctactatca
gccttgtcattttcaagaagacggagttacatggcctcctgcaggccgtatgggtccaaa
tttgaaattcatcggcctcagtctacatccaatctacggtggacacttcgcatttcgatc
ggttctcatcttccccaatgtcaaaattccggaattctgcgaaaaggaaccccgtccgat
tctgacggcttctgaagatgttcgcacagcactggagaaattcaattacaattggaagga
ctctggattccgtgattttggaaatccaacgcgacgatattccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGTCTCATCTCCAATTCAGAGC 76 409 1269 Antisense
ACGATTACTCGATGACTCCACAACG 167 93 1364 Antisense
ATGCGGGCATGTTGCTGGAGCAGCT 96 43 1413 Antisense
AGCAGCTTTCTACTATCAGCCTTGT 526 77 1431 Antisense
TTGAAATTCATCGGCCTCAGTCTAC 471 705 1510 Antisense
CCTCAGTCTACATCCAATCTACGGT 581 265 1524 Antisense
GACACTTCGCATTTCGATCGGTTCT 360 367 1550 Antisense
TTCTCATCTTCCCCAATGTCAAAAT 693 689 1571 Antisense
CCCGTCCGATTCTGACGGCTTCTGA 368 1 1619 Antisense
GAAGGACTCTGGATTCCGTGATTTT 460 333 1683 Antisense
GAAATCCAACGCGACGATATTCCAC 106 363 1709 Antisense
Sequence Source Affymetrix Proprietary Database