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[185952_at]

Description Y39A1A.18 /REP_DB=WormBase Gene ID /WP=CE19138 /TR=Q9XX29 /GB=CAA21011.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 85      4grp_total > 28      6grp_highest_sub > In      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 72
(-3)
P 		82.3
(-0.1)
P 		85.5
(0.8)
P 		93.4
(3)
P 		21
B 101.4
(1.2)
P 		120
(3)
P 		59.3
(-3)
P 		71
(-1.8)
P 		61
C 99.2
(0.3)
P 		59.7
(-3)
P 		71
(-2.1)
P 		131.4
(3)
P 		72
avr 90.9
(1.3) 		87.3
(0.5) 		71.9
(-3) 		98.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 128.2
(2.7)
P 		67.7
(-3)
P 		89.9
(-0.9)
P 		106.9
(0.7)
P 		112.6
(1.2)
P 		131.9
(3)
P 		64
B 62.9
(-3)
P 		129.7
(3)
P 		64.4
(-2.9)
P 		99.2
(0.3)
P 		115.2
(1.7)
P 		105.7
(0.8)
P 		67
C 37.2
(-3)
P 		96.4
(0.2)
P 		44
(-2.6)
P 		147.1
(3)
P 		96.7
(0.2)
P 		117.1
(1.4)
P 		110
avr 76.1
(-1.8) 		97.9
(0.7) 		66.1
(-3) 		117.7
(2.9) 		108.2
(1.8) 		118.2
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 26.2
(3)
P 		17.9
(-1)
P 		22.3
(1.1)
P 		13.7
(-3)
P 		13
B 32.3
(3)
P 		29.6
(2.1)
P 		13.7
(-3)
P 		15.1
(-2.5)
P 		19
C 32.8
(3)
P 		17.2
(-3)
P 		24.7
(-0.1)
P 		22.2
(-1.1)
P 		16
avr 30.4
(3) 		21.6
(-0.9) 		20.2
(-1.6) 		17
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.6
(-1.3)
P 		24.1
(-1.1)
P 		19.6
(-3)
P 		27.1
(0.1)
P 		34
(3)
P 		32.1
(2.2)
P 		14
B 21.9
(-1.8)
P 		43.2
(2.3)
P 		15.6
(-3)
P 		26.3
(-0.9)
P 		46.8
(3)
P 		39.4
(1.6)
P 		31
C 13.8
(-2.4)
P 		29.4
(0.9)
P 		11.2
(-3)
P 		29.6
(0.9)
P 		31.3
(1.3)
P 		39.2
(3)
P 		28
avr 19.8
(-1.8) 		32.2
(1.6) 		15.5
(-3) 		27.7
(0.3) 		37.4
(3) 		36.9
(2.9) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6440
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.18 NCBI
Target Description Y39A1A.18 /REP_DB=WormBase Gene ID /WP=CE19138 /TR=Q9XX29 /GB=CAA21011.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066954 NCBI Caenorhabditis elegans Y39A1A.18 (Y39A1A.18) mRNA, complete cds. 11/11 None
SNAP00000012925 ENSEMBL cdna:SNAP chromosome:CEL140:III:10692098:10692612:-1 9/11 None
GENEFINDER00000012946 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10692098:10694268:-1 11/11 None
Y39A1A.18 ENSEMBL cdna:known chromosome:CEL140:III:10692098:10692769:-1 gene:Y39A1A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10692093-10692765(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A1A.18
Entrez Gene 189712 Entrez gene
SwissProt Q9XX29 EMBL-EBI
WormBase CE19138 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21011 Hypothetical protein Y39A1A.18 [Caenorhabditis elegans] ref|NP_499355.1| Y39A1A.18 [Caenorhabditis elegans] 2.0E-74
blast CAA21011 Hypothetical protein Y39A1A.18 [Caenorhabditis elegans] ref|NP_499355.1| Y39A1A.18 [Caenorhabditis elegans] 6.0E-74
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 1.0E-54
blast CAA21011 Hypothetical protein Y39A1A.18 [Caenorhabditis elegans] ref|NP_499355.1| Y39A1A.18 [Caenorhabditis elegans] 5.0E-52
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 2.0E-39
blast NP_503372 K10C9.7 [Caenorhabditis elegans] gb|AAC17671.1| Hypothetical protein K10C9.7 [Caenorhabditis elegans] 3.0E-24
blast CAE71035 Hypothetical protein CBG17876 [Caenorhabditis briggsae] 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185952_AT
gaaagcatcttgagaccacttaccccaataaaaggactccggaaagccgtgccaaatcac
gtgaaattctcaagttaattgccgacaacctggaaatgtttccaatcgcatctccagagt
cttcatcttccaaggctaaaacagatccgatgtcccgtctcgagcacggaagcgagttca
acgatttgactgttccgagagttgaaaaattgacaccggtttccgagttgtacagcattg
aaaacacgtcgttgaagtttggtacggaagacgatttttctgatctgtcatactcgaata
cttcaccatttcaatctgtctcaactctttacgatcagccatcaaccccattctctgatg
attcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCATCTTGAGACCACTTACCC 674 359 32 Antisense
GACTCCGGAAAGCCGTGCCAAATCA 663 373 66 Antisense
TCCAATCGCATCTCCAGAGTCTTCA 512 587 132 Antisense
AGAGTCTTCATCTTCCAAGGCTAAA 60 69 147 Antisense
GCTAAAACAGATCCGATGTCCCGTC 174 303 166 Antisense
TCCCGTCTCGAGCACGGAAGCGAGT 39 597 184 Antisense
GACACCGGTTTCCGAGTTGTACAGC 571 363 243 Antisense
GATCTGTCATACTCGAATACTTCAC 323 419 313 Antisense
TACTTCACCATTTCAATCTGTCTCA 476 645 330 Antisense
TGTCTCAACTCTTTACGATCAGCCA 7 557 348 Antisense
CAACCCCATTCTCTGATGATTCGGA 95 187 374 Antisense
Sequence Source Affymetrix Proprietary Database